Chr:
Chr8
Start:
4278253
End:
4278993
Strand:
.
Ref_name:
OSA-LNCN6890
Sequence
(OSA-LNCN6890.1):
GAAAUACAUGUAAAGACAACUAUAAAAUGCAAGAGCUCUCGUGAUCGAGAUCAAGAUCAACCACACACCAAUCCACUCUAACACCUACGAGCUCCGAGCUGCAGCCAUGGCCAUGACCUUGCCGUCACCGACAUCGCCGUCGUUCUACGUGUCGUCCUCCCCGCGCCACCAGCCGGGCCUGCUCCUCCCCCUCCCGUCGCCGUCCUCCUCCGACCGGCGCCGCCCGAUGCAGCUCGCCGUCGCGGCAGCAAUGGACACUACUCCGAGACAAGGCGGAGUGCUCCUGGAGAUGAGGCCUAGAGGAGGAGGUGGGGGAGCUCCCCGGAGGCCGGCGCCGCCGGCCGGUCCGAGAGAAGGGCGCGGCGGAGUGGUGGUCGUCCAUGCGGUGGCGAGGGACGCUCCUCCGGAGACAGGCUCUGGCCCAAAGAUCCAUUGAUUCACAAGAAAUACAAGAUCGUCAAGAGCAAGAUUAACUGAACGUUGUUAGGGAACAAAUUAGUUUCUGAACUUAAUAUCUUCGUUUUUUAAUAUAUGAUGUCGAUGAUUUGUACAUUAUGUAUGAGCAUUUGUUUUACCUUAAUUAAGAUGCCAUGCAUUUCUGUUACAUUUUUGCGAACGAUUUUGGAAGAGUUAUUCAUUAUAUGGGUAUGAUGCACAUGUCUGAAUUAAUUAAUGCAAUCAAGCUAUCAUCAAUUAUAUAUGAUGCACAUUGUAUUUCUUAAUUACACCUUUUGUACCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.82%
ME_num:
MEP:
29.88%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.84
Avg Expression:
3.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.13049101556194 | 0.0280553779831232 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.35941423706874 | 0.0399211623135478 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.20999065829202 | 0.00612900464345995 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.91797372759334 | 2.31905610346865e-09 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.71089197637609 | 0.0414558516921094 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.0163879986043 | 0.0188133161735455 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.45000251199524 | 5.26845507244999e-18 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | -3.73171553139222 | 9.58404793294211e-19 |
| 9 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -2.34242249175633 | 5.62391620848604e-05 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -2.26117911166884 | 0.00101068990056175 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.710092996101 | 0.0248518920024264 |
| 12 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.19161737995102 | 8.46523951082248e-07 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | -3.75572409753617 | 8.16015057083413e-10 |