RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6884

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

4100109

End:

4101713

Strand:

-

Ref_name:

OSA-LNCN6884

Sequence
(OSA-LNCN6884.1):

CGCAGGCGUACGCACCACGCUGUAAUCCAUCAUCGAUCGACUCACUCCAUAAUUAAUAAAUCUACCCUCACCUCACGCUCAUAGCAAGCACGUACCAGUUUGCCCUCCUCCCCAUCAUCUCGGCCUAGCUCCCCCUCCUCCUCAUCAGCAUCACGUCCAUCUCAUUGCAAAAGCUGCCACAACAACAACAACCGGUUCGAUCGGGUAUAUAUAGCUAGGCGAUUGUGUGAUACCGUACGUGCUAUGAUUUGGAGUAAUUUAUGAUCAAAUAUUUGUUUGUUGCGCUUGCAGGAUCGCGUACGUGGUGGAGGCGGCGGUCUGAUGGAGAUGGACGGCGUUUACAUCAGGAGAGACACAGAUCUUCCGCAGAAAGAAGAGAGGGCUGGAGUAAGAGAAUAUGAGAUGAGCCCCUUCCAAAGUGACAGCGGGGUAGGUAGGAUGGAGGCCGAACAUGCACCUUCUGGUCGCCAUACCGGAGGUGAACAAGAUGAGGUUGCCUAGCCAAGCGACGCUGGUUGCUUCAGCCACCUUUUAAUUGGCCGGCGUUCUGGAGGUGAAGAAGAUGAAGUUGCCCAGCCAUGCUUCAACGCCUUUUGGUCGGCGUUCUGGAGGUGAAGAAGGUGAGGUUGCCCAACUAGGUGCGAAGCUGGUUGCUUCAGCGACUUGUGGCCGGUGUUCUGGAGGUGAAGAAGAUGAGGUUGCCAAGCCAGGCGACGCUGGUUGCUUCAGCUCCUUUUGGCCAGCGUUCUGGAGGUGCCCAGCCAGGCGACUCUGGUUGCUUUAGCGCCUUCUAUCUGGCGUUCUGGAAGUGAAGAAGAUGAAGUUGCCCAGGCAUGCUUCAGCGCCUUCUGGCCCACGUUCUAGAGGUGAAGAAGACGAAGUUGCCCAGCCCAGGCGACACUGGUUACUUGGGCGAUGAGUCUUGAGAGACACCUGUAGGCCACGCAUGAAGAUGCCUUUUUGUUAUGAUCCGAUGCUCUCGUUAAUUGAAUCGCUCUGUCGGAUAGUCCAUGUUUCUUUUUUAUGCUUUAAAUACGAUAGCUUUUGUUUUUUUUUAAAAAAGAAAGUUCUAGCUACUAAAU

Sequence
(OSA-LNCN6884.2):

CGCAGGCGUACGCACCACGCUGUAAUCCAUCAUCGAUCGACUCACUCCAUAAUUAAUAAAUCUACCCUCACCUCACGCUCAUAGCAAGCACGUACCAGUUUGCCCUCCUCCCCAUCAUCUCGGCCUAGCUCCCCCUCCUCCUCAUCAGCAUCACGUCCAUCUCAUUGCAAAAGCUGCCACAACAACAACAACCGGUUCGAUCGGGUAUAUAUAGCUAGGCGAUUGUGUGAUACCGUACGUGCUAUGAUUUGGAGUAAUUUAUGAUCAAAUAUUUGUUUGUUGCGCUUGCAGGAUCGCGUACGUGGUGGAGGCGGCGGUCUGAUGGAGAUGGACGGCGUUUACAUCAGGAGAGACACAGAUCUUCCGCAGGUUUGUUAAUUGAACCACGGUCCCUCUCCCUUCGCCAUAGAAUGUUCGUUCGAUCCCAAUAUUCUUUUUUAAUUACGUACGCUUCUUUUUUAAUUAAGGUUCUUGAUUGAUUUGUUUCCAAUUAGAUAUACUUGAGCACUAUAGUAUUGUUAGCUGCGCAGCUGUCGUCGCUGUGUGAGGAGGAGGUGGGGAUUGGGAGGAUGCAGCAGCGGUUGUGCGUGUGGAAGGAGACAGUGCGCCCUGUCACGGUGACGGGCGUAGGGAGAGGAAGAGGAGGACAUCAAGACGACGACGGCCUAGGCUUCUCGAUCUCAACCUAGCUAUUGAUGAGUAAAAGAAGAGAGGGCUGGAGUAAGAGAAUAUGAGAUGAGCCCCUUCCAAAGUGACAGCGGGGUAGGUAGGAUGGAGGCCGAACAUGCACCUUCUGGUCGCCAUACCGGAGGUGAACAAGAUGAGGUUGCCUAGCCAAGCGACGCUGGUUGCUUCAGCCACCUUUUAAUUGGCCGGCGUUCUGGAGGUGAAGAAGAUGAAGUUGCCCAGCCAUGCUUCAACGCCUUUUGGUCGGCGUUCUGGAGGUGAAGAAGGUGAGGUUGCCCAACUAGGUGCGAAGCUGGUUGCUUCAGCGACUUGUGGCCGGUGUUCUGGAGGUGAAGAAGAUGAGGUUGCCAAGCCAGGCGACGCUGGUUGCUUCAGCUCCUUUUGGCCAGCGUUCUGGAGGUGCCCAGCCAGGCGACUCUGGUUGCUUUAGCGCCUUCUAUCUGGCGUUCUGGAAGUGAAGAAGAUGAAGUUGCCCAGGCAUGCUUCAGCGCCUUCUGGCCCACGUUCUAGAGGUGAAGAAGACGAAGUUGCCCAGCCCAGGCGACACUGGUUACUUGGGCGAUGAGUCUUGAGAGACACCUGUAGGCCACGCAUGAAGAUGCCUUUUUGUUAUGAUCCGAUGCUCUCGUUAAUUGAAUCGCUCUGUCGGAUAGUCCAUGUUUCUUUUUUAUGCUUUAAAUACGAUAGCUUUUGUU

Sequence
(OSA-LNCN6884.3):

CGCAGGCGUACGCACCACGCUGUAAUCCAUCAUCGAUCGACUCACUCCAUAAUUAAUAAAUCUACCCUCACCUCACGCUCAUAGCAAGCACGUACCAGUUUGCCCUCCUCCCCAUCAUCUCGGCCUAGCUCCCCCUCCUCCUCAUCAGCAUCACGUCCAUCUCAUUGCAAAAGCUGCCACAACAACAACAACCGGUUCGAUCGGGAUCGCGUACGUGGUGGAGGCGGCGGUCUGAUGGAGAUGGACGGCGUUUACAUCAGGAGAGACACAGAUCUUCCGCAGCUGCGCAGCUGUCGUCGCUGUGUGAGGAGGAGGUGGGGAUUGGGAGGAUGCAGCAGCGGUUGUGCGUGUGGAAGGAGACAGUGCGCCCUGUCACGGUGACGGGCGUAGGGAGAGGAAGAGGAGGACAUCAAGACGACGACGGCCUAGGCUUCUCGAUCUCAACCUAGCUAUUGAUGAGUAAAAGAAGAGAGGGCUGGAGUAAGAGAAUAUGAGAUGAGCCCCUUCCAAAGUGACAGCGGGGUAGGUAGGAUGGAGGCCGAACAUGCACCUUCUGGUCGCCAUACCGGAGGUGAACAAGAUGAGGUUGCCUAGCCAAGCGACGCUGGUUGCUUCAGCCACCUUUUAAUUGGCCGGCGUUCUGGAGGUGAAGAAGAUGAAGUUGCCCAGCCAUGCUUCAACGCCUUUUGGUCGGCGUUCUGGAGGUGAAGAAGGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

393

LEP:

79.88%

ME_num:

84

MEP:

17.07%

HE_num:

14

HEP:

2.85%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.92

Avg Expression:

2.22

Tip: OSA-LNCN6884 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"2.249982035670724.54788152226215e-06
2Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"2.196200291600950.00523802304185687