Chr:
Chr8
Start:
3234370
End:
3234830
Strand:
+
Ref_name:
OSA-LNCN6862
Sequence
(OSA-LNCN6862.1):
UGUCGGUGUUUCUCGGAACCGUCCUCGGUGAGCUACACGGGGAACAAAAAGAACAGAAAAAUUACUCAUCUUCUCUUCAGUUCGUGCCAUGAGAUUUCUUUCCUUGGUUAACAUCUGCACUCGAUUGAUCUCUUCUUCAAGGAGAAAAACCAUCUUUUUUGGUUACUUGGUAGUUUCUGGGACAAGCUAAUGACAGCACGAAUGCCUUAGCAAGAAUUUCAACCAGCUGCCUCUUCCAUGAGAAAAGGCAACCUGAUGAUGCAAGUUCGAUAGACUACAGAUCGAUUCCAAUCCAACCUCGCCGGCGAUGGUUCCGAGAAACAGCAGUUGCUGGGCGAUGGGACCAACAGCAGACACCGAGGCGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
5.08%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.55289806818765 | 0.000634063689142052 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.54731147968206 | 0.0156961174087893 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.79768017193914 | 0.00602127562431992 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.96462162079155 | 0.00445030771318467 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.36632817015868 | 0.00080754197038444 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.9734513854207 | 0.0150835068093363 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.98351382169507 | 0.000100456299857682 |