Chr:
Chr8
Start:
1997512
End:
1998537
Strand:
+
Ref_name:
OSA-LNCN6836
Sequence
(OSA-LNCN6836.1):
GAGUCAAGUAGCAAUAACCCAUAAAUUACACUAGGAAGCCAAGUUGGAAUCAUGUGUUAAGGCCCCUAAUACAUGAUGAGCAUCUAAUCAUUUUGCUAAAAAGAAGUCAUAAGCAGCCAAGGAGUUAUCAAUGUUAUAAAUAUGUUUGUGCAUAUGGAAAAGCUGGUACUACUUUUGCCAUGUGAUUUUCGGAAUGAUGUUAGUCUAUUAUUGAGUUAGACUGAAGUAAUAAUGAAAACCAUAGAGCAAAUGAACUUUCUGGUGUAUAAGUUACUUUCCAGUAGAAGAUAGUAUCUAAUUGGUCGACAAAUGUCAAACAUUAGUGCACCGGACCAAACUAAAACCAUGAACUUCUUGUGCUCUGCACACUUUAGCAGCAAAAAGAAUCUAAUUCCUUAUUAUGGAAGUAAGUUAAGUACCUUUCAGCUGUCAUACAAAGAAAGUCAACCCUUCCCAUAGAAAUAGAUCUAGAUUUUUUAGCAGUAAAACUAAGCAAGAAAACGAGCACUCCUAUGAGAAUCCUCAGAUCUAAGGUACUCAGCUUUUGGAACUUGGCGAUGGCAUUAACAACAUUUUGCGUCAAUGUCUCACACAGAAGGCAUUAAUCAUCUUUGAAAAAAAAAUAAUGUUCUUAUGGAAUAUGAACGACAAAACCCCAUUCUCAGCUAUGGGAGAGCUCAAGCUUGACACCAUCUUCGAAUCUCGAAAGCGCUCACUCUAGACCGCACACGGAGAUGCAAUCCACCAAUUUUCACCAAGUUUACACGCAUCCCGCGGUGUCAGAACAUCCAUGACGCCAAUACUGAGACAACAAUUAACACUAAUCUAAACCCUCCUGACCAUCCAUGAAAAGCUAGAGGGGAACAGAAAUCCGGAAUCCUACCCAUUUCGCACACCGUACAGCACCAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.21%
ME_num:
MEP:
59.96%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.74
Avg Expression:
2.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.00670048913254 | 0.0108049151648637 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.84113547187109 | 0.0194587568412613 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.29658703454663 | 0.0197997568253302 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.29647710054999 | 0.0199945325975588 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.29636831790897 | 0.0198729497097299 |