Chr:
Chr8
Start:
1301063
End:
1313452
Strand:
+
Ref_name:
OSA-LNCN6826
Sequence
(OSA-LNCN6826.1):
GGGCAUGUAGCCUAAUGGUUACAAGAGUCUCAGUAGCACCUGAGGUCCUGGGUUCGACUCCCCGUGGGAGCGAAUUUUCUAGGAUUUAACGGCGUUGUGCUUUCAGUGGUAGGCGACGUACCCGUCGACAGCGAGGCGCCUGUGGUGACUUCGUCAAUCUCUCCAGAAUUUGCCGGCCAGUCUUCGAAGAUGCUCAUAGGGGUAGGGUUUGCGUGCGUAUGUUUAUAUGGGUGAGUACGUGUGCGUUGUGAGUGUCUGCGUUGUACUGUGUAAUUCUAAAAGAAAGAUUGUGUUGGGAAUUUCUCACAAAAUAGGAAAUGAUCUUUAGUUAUUUCGCGUUAGAUCUUAACUCGGAGAGUAAUCCUAAUUGAUCAUGUGUUAGAUCGGAUUACUGGGUUAAAUACAUGGAAAAAUAAUGUUCCACCUUUAAUUUAUCGAUACCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.03%
ME_num:
MEP:
37.4%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.92
Avg Expression:
20.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.0962860607662 | 0.000587921170418092 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.59471466725381 | 0.0379622115501529 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.06657773935612 | 0.00992433474665953 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.29134611575981 | 9.07026926023192e-05 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.26425168321989 | 0.0134719657009312 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.59201639683606 | 0.016614974734366 |