Chr:
Chr8
Start:
471535
End:
472219
Strand:
-
Ref_name:
OSA-LNCN6809
Sequence
(OSA-LNCN6809.1):
UAAAUUUGGUGAGAUGAUGAGGCUAAACCUUUUUGGAAACAUUGAUAGUAAAUAAAUUAAGUAAAUUGUUCCUCCCUAACUGCAAAGAUUCCAUACUGAUGAGAAUUUCAAUCUUUUAGAUAAUGGAUGAGAAUUUCAUGACAGCAACUCUGCAGGCUGAAACUAAUGGGAAGGUCAUUUUCUCCAUCCACCUUUAAAGUUAUGGAGGUUCUUACUUCUGCAUGAUGAUGGCUCUAAUGGCCCCUUCUGCUUCCUUUCUGUUUCUUUUUCCUUUUAUUUUCUUUUUUUAAAAAAUAAAGAUCAUCUUUGUGCUUCCCUUUUAUAUUUCUGUUUAACUUUUUUUCUCCUUCUCCUCCCUUUACGCGCGAAUUCUGUCUUUGAACAUUCAGGCAGUAUUUUGUUCUCUUGUUUGCUGUCAUGCGUUUUUAUGAUCUCCCAGAACAAGUUGUGAUCACAUCAAAACAAGGAGCAACUUAAAUAUACCCCUGACUGAACCAGAGCAAUCUCUUACAUUCAAAAGAGAUAUGAAGGUUGUGUUGUAUUUUCAGAACAAUGAGUAGAUUUCAUCUCAACCUAAUUCAACACAAUGUUUUCAUGGCAGAAAUUUCUAGGAAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.98%
ME_num:
MEP:
59.15%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.90
Avg Expression:
20.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.03745702225573 | 0.0272543441467825 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.15839885881465 | 0.00989502330464091 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.14333210807346 | 0.0431708121190384 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.48620051417372 | 0.000994085989477515 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.19028633631818 | 0.000116410677188502 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.63626790255939 | 0.000494483467450246 |