Chr:
Chr8
Start:
169336
End:
170374
Strand:
+
Ref_name:
OSA-LNCN6797
Sequence
(OSA-LNCN6797.1):
GGGGCAAGGGGAAGGGGAGGAGUUCUUCGGCUCUAGAGGGUUGGCUAGGAGAGGCGGCAGCCCAGCGGUGGGCGGCGAGACGCCGGCAGCGGCGCCGGAGCGCAGGGCUGGAGGAGGGCGGUGGACCAGCGUUGGUGUCGGGGGCAUCUCGCCGCCGACGGCUUGAGGAGGAAGGAGGGGGGAGGAGGAGGAGGCUGGCUGGCCGAGGGAUCUCACCGGCGCCGUUGACGCCCUCCGGCCAGCCGGCGAGGCAGCAGGCGGCACAGUGGGGCGGUGGCGGUGGAGGAACACGCGAUGGGAGGGGAACGGGAGGAGGAGCGCUAGGGUUAAUGCCUCUGUACGAAUCUUAAAGCAUAUUUGAUGGUCCAAAAUUUGAAGGAUAGGAGGUGGGAUUUUAUGUCAGCAGAUAUAUAGGCCGUCUCAACAAAAAAUUUGCGAAUGUAUACGAUCGAUCAAUGAAUUAAUCAUGCAUUCAUAUAUAUACAAGAGUGUAUGCAACCAUUCGUUCUCGCUCUCCUCCCUCGUCCUAGUUUUGCGUAACAUAGCCGCAUCGCCAUACUCGGGCGCUGUUGUCUCCCUUCCUCGACGCGGCGAGGCUACACCAACUGGCUCCUUGGACGAGCAGUCGCCAGACCGUGCAUGGUUAAGUUCAUCCGUCGUCAAUGGAUGCCGAUCGAGUUUAAUUGGCGCCUCCUCCGACGCCGUCGACUUAAUCUUGGUGAGGGCGGCCUGCCUUAGGAGCCUAUGGUUUGCAUAGCUCUGUCCAUCCCCAUUGCCGUUGACCUGAUCUCGUCGAGCUGAGGCCUAUGACGAUCGAGCAGAUCAACAUAACGAGCAUCAACCUCUCCACGCUCCUCCGCCAAGAGCAUCAACAUCCGUUGCUAACAAGUCUAGUUGGAGGCUGCCCAGUGAAACGUCCCAUCCUCCACUGUCAGAUUGGAGAAAUUGAUUGGGGAGGAUAAAUAUCUAUAGGAGUGAGAACGAAAAAAACAAAGAGAGGCUGAUAAGUAAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
14.23%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.41619779294194 | 0.00759239138182436 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.47722442925782 | 0.000713501740040083 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.76429034203428 | 0.0190913054294423 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.6361691591077 | 0.0119100594783853 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.77209821991049 | 0.00235026997016123 |
| 6 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -5.2445704121926 | 0.0043528077609926 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.93214079396492 | 5.81996960791376e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.50638478048523 | 0.0386305013429597 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.08220444763829 | 0.00472600898818914 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 4.44556637888552 | 0.00893001901517649 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -7.18920235287258 | 1.18318589054853e-10 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.68890195141228 | 0.0163368642195303 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.37164098402589 | 0.007793549463267 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.85154724937435 | 0.00161761243083798 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.21201130942359 | 0.00198473517782207 |