Chr:
Chr7
Start:
29652271
End:
29656726
Strand:
-
Ref_name:
OSA-LNCN6794
Sequence
(OSA-LNCN6794.1):
GCGUUUUCUCAUUGAUUUCUUUGGGGGGAAAGUUCACUUUAGGUCCCUCAUCUAAAGUUGAACAACUCAAAACUCCAGCAUCGGAAAGAAGGAUUAGACCGAAGUGGAGCCGGAGACAGAGAUCGAUUUGAGAACAGAGUAAGAAUCGGCUGGAGUCCGGAUCGGCUACAAUUGGAUCGGCUAAGUCCGAGUCAGACUGGGUUAGGUAAUACAACCGAUUCCGACAAUACGACUUGGUGUACAACAUCGGGUUAAGUCAAUAUGCUUCAAGAUGAUUGCCGCACAUGUAUAGAGUCCUGAGAAAGCAAUUGUAUCUAUUAAUUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.9%
ME_num:
MEP:
5.49%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.7488022535847 | 0.0105468926039357 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.74192156951018 | 0.0024360527533798 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.89133647707187 | 0.00157562562588069 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.90781150529471 | 0.0236733898459081 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.11488311667836 | 0.00202221357490865 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.28132926935569 | 0.00140315421590984 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.96312861717303 | 0.000118188725240113 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.61088596358888 | 0.00532933127700474 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.66915723144592 | 0.000237229309944419 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.17740013603252 | 0.000667482739308157 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.56825222596116 | 0.000566379556321823 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.31037710204538 | 0.000344808656752027 |