Chr:
Chr7
Start:
29460658
End:
29462193
Strand:
-
Ref_name:
OSA-LNCN6790
Sequence
(OSA-LNCN6790.1):
GCUUAUUGCAUAUAGGUUUUGGAGGAAACUUAGCAAGAGGUCCAACCUCUUGGAAAAAAUCCUUUGAGUCUAUCUCUCUCAUCUGAUUCUUGUGUUUUUCCUGUGGUCCAAUCAAACGAUCAUUCAUGUGUUUUGCAAUCCUAUGUUUUACACUUACAUUUCUAUCCGAAUUCUAUGUUUUUCAUAUUUCUCCGUUUUUUCAUUCGUACGAUUCAAAGGAGUCCUUAACCUGAGCCAUCUGGAGGGUUGUCGUCAAAGUGUUCGUAGGAGAGUUUUUUCUUUAGGGAAAAUUGCUUAUUUGACCCUGUUCUGAAGUCUAAUUAUCAAUUUGACCUUUCUUUUUCAAGUUUGCUUAUUUGACCCUAUUUUUCAAGUUGUCGUCUGACCCUGUUUUGACUGCACCGCUAGGGUUUCAUUUAGCAAAAUAAAAAAAUAUAUAUAUUUACAAGCACAACUGACCAAAAUACCCUUAGUAUAUAUUAACCCUAUCCUUAAAUUUCUCGCCACUCCUUCCUUAUCCUCUCCCUCUCUCUCUCUCUCCUCUCACCAGAAGCUCUCCUCGCCGUCCUCGUGUAGAAGCGAUGCACGGCGGCAGGGGAAGGGGCGACGGCGGCUUCACGAAGAGGAGCGGCGGUGGCGGUGGCUCAGCGACGAGGAGGAGGGGCGGCGGGAGGAGCUGCGGCUCGGCGGCGCGAUGCGGAGGGCCGCCGCUGGCGGCGGAUGCGGAGGAGCGGCAGCUCGGCGACUAGGAAGGCCAGAGGCAGCUGCGGCUGUGGAGGGGCGGCGAGAGGAGCGGCGUCUUGGCGGCGCGACGCGGAGGGCCGCCGCUGGGCGCUGGCGGCGGAUGCGGAGGAGCGGCGGCGGAGGGGCAGCGGCCGCUCGGCGACGAGGAAGGCCGCCGCUGCCGGCGGAGGAGGAGAGGCGGCGGCUCGGCGACGAGGAGGGCUACCGCUGGCGACGACGGGCGGCGUUGGCUCGGUGACGAGGAGGGCGGCCGCUGGCGGCGAACGAGCGGUGGCUGCAGCUGCGGAGGGGCGGUGUCGGCUCGGCGACGAGGAAGACGACCGACGACGGCGGCGCUGGCUCGGCGGUAGCUGCAGAGGGGCGACGUCGGCUCGUCGACGAGGAGGACGGCCGGCUGCAAUUGCCCCUAAUACGUACUAUGACUGCCGUUGUUGAGGGAGAAUGAGGUCAAAUAAGCAAGGGUAGUAGUGGAGAGUAUUGGAGCAAGAGAAGAGAAGGUUGGAGUAGUUUUGGAGCCGUUGAAACUGGUUUUCCUGGCACGUGAUCCUGCUACAUCUACUGCACCGUUGGUCCAAAGCCCAAAGGUAUCCUCUGCACUGCACUACUGCAAGUCUGCAACUUAC
Sequence
(OSA-LNCN6790.2):
GCUUAUUGCAUAUAGGUUUUGGAGGAAACUUAGCAAGAGGUCCAACCUCUUGGAAAAAAUCCUUUGAGUCUAUCUCUCUCAUCUGAUUCUUGUGUUUUUCCUGUGGUCCAAUCAAACGAUCAUUCAUGUGUUUUGCAAUCCUAUGUUUUACACUUACAUUUCUAUCCGAAUUCUAUGUUUUUCAUAUUUCUCCGUUUUUUCAUUCGUACGAUUCAAAGGAGUCCUUAACCUGAGCCAUCUGGAGGGUUGUCGUCAAAGUGUUCGUAGGAGAGUUUUUUCUUUAGGGAAAAUUGCUUAUUUGACCCUGUUCUGAAGUCUAAUUAUCAAUUUGACCUUUCUUUUUCAAGUUUGCUUAUUUGACCCUAUUUUUCAAGUUGUCGUCUGACCCUGUUUUGACUGCACCGCUAGGGUUUCAUUUAGCAAAAUAAAAAAAUAUAUAUAUUUACAAGCACAACUGACCAAAAUACCCUUAGUAUAUAUUAACCCUAUCCUUAAAUUUCUCGCCACUCCUUCCUUAUCCUCUCCCUCUCUCUCUCUCUCCUCUCACCAGAAGCUCUCCUCGCCGUCCUCGUGUAGAAGCGAUGCACGGCGGCAGGGGAAGGGGCGACGGCGGCUUCACGAAGAGGAGCGGCGGUGGCGGUGGCUCAGCGACGAGGAGGAGGGGCGGCGGGAGGAGCUGCGGCUCGGCGGCGCGAUGCGGAGGGCCGCCGCUGGCGGCGGAUGCGGAGGAGCGGCAGCUCGGCGACUAGGAAGGCCAGAGGCAGCUGCGGCUGUGGAGGGGCGGCGAGAGGAGCGGCGUCUUGGCGGCGCGACGCGGAGGGCCGCCGCUGGGCGCUGGCGGCGGAUGGGCAGCGGCCGCUCGGCGACGAGGAAGGCCGCCGCUGCCGGCGGAGGAGGAGAGGCGGCGGCUCGGCGACGAGGAGGGCUACCGCUGGCGACGACGGGCGGCGUUGGCUCGGUGACGAGGAGGGCGGCCGCUGGCGGCGAACGAGCGGUGGCUGCAGCUGCGGAGGGGCGGUGUCGGCUCGGCGACGAGGAAGACGACCGACGACGGCGGCGCUGGCUCGGCGGUAGCUGCAGAGGGGCGACGUCGGCUCGUCGACGAGGAGGACGGCCGGCUGCAAUUGCCCCUAAUACGUACUAUGACUGCCGUUGUUGAGGGAGAAUGAGGUCAAAUAAGCAAGGGUAGUAGUGGUAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.82%
ME_num:
MEP:
58.54%
HE_num:
HEP:
27.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.73
Avg Expression:
7.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.49029386078431 | 6.41097944065766e-16 |
2 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.00138122748016 | 0.0492415490453746 |
3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.09332858679451 | 0.0351793185972292 |