Chr:
Chr7
Start:
28976358
End:
28977132
Strand:
-
Ref_name:
OSA-LNCN6783
Sequence
(OSA-LNCN6783.1):
UUUGAAAACAAGGGCAUAGUAGUACUAUUGUGUGUGUGUGUAUAGUAAUAGCGGGUGUUCACAAAACGAGUGAAACAUAAUUAAUUAAUCCAAGUAAGUACACAAAAGACCAUGGAUCGAUAUGAUGUAGAUUGCAUCAACGAGGAACAACCUGUACUUUGGCCAUAGAUAAGAUAGAAACGGCGCGAACUGAACUAACUAAUUCAGCAUGCAUCAAGUUAACAGCGACACACUAAGCUAUAGCUAGCUAGCUCGUCAUCGAUCCGUCCGGCCGGGGCGGCGAGAAUCUCUGAUAGGUCGUCGGAUCAGCCAGGUGCAUGCACGAACGCAAUGGCCGUCGCCGUCGCGAAGAAGCCCUUGCGCGCAUUGGCUGGGGUUUUAAACUUUUGGCGCGGCGUGCAGUGGUUAAAUUAGUCGUAGCACGCCUCGCCUUGUCCCUCUCGUCGCCACACGCGUCGCCGUGCGCGCGCCGCCACCUGUAGCUGUAGCUCUGUACAUAUGCAUCUCAUCCAUCGCUUAAUUACAUCGACCUGCAACUACUGGCACACAUGUGUACAGCUCUCGCUCAUGUCAUGCCUCCUCUCGACGACGACGACGGAGACGGCGAUCUCUCUAGCAAAAGCUAGCUAAGCUCAAGUGGAUCAAAGCAGCAACUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
4.47%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.07154344340579 | 0.0022900562985352 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 5.01442930830301 | 0.00259577855336706 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.82044989523579 | 0.00197566684644394 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.22029783066002 | 0.0100310021028312 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.90698072662572 | 0.00496311301775137 |