Chr:
Chr7
Start:
28560726
End:
28561134
Strand:
.
Ref_name:
OSA-LNCN6770
Sequence
(OSA-LNCN6770.1):
CCUUCGCUCUUAAUUUCUUCUAGAGAAGCAGCUUGGAGGAUGGGGCAAACCCGGCAUCCCCACAGGGGACCAGCUAGUGCUGAUCGACACCAGUUCACAUCCAACCAACGAAAAAGGGAAAAAUGAUGUAAAAAAGAAGAAGAAAAGAAGAGAUCCGAGAAAGUUUUUAGUAUUCCAUGGUGUUAUAAUUGGCUACCCUUUUGUACAAGUGGUUGAAUGCGCUCAGAUCAGAGAGUUGCUCAGGCCAACAAGCCAAUGUUGUUUCUUGUUUGCAGCCUUUUAGGCAGAGCACGCAUAUGCAUCUCGAUUUUGCAAAUUGCAGUGCUCGAUCGCCAGCCACGCGUUUAAUGGCUAAUUCCCCCCUCACCUAACCAUUCCCGUGCUGCAUAACUCCAAAUGCCAAGAGCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
31.1%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.89
Avg Expression:
4.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.66582871140764 | 0.00128254315170909 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.41994011029229 | 0.00402927362473001 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.63360563913172 | 1.57049316749882e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.44279571261357 | 6.70102514578225e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.36712957193638 | 0.0160220090205202 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.78566471509947 | 0.000210502454393823 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.17275734029408 | 0.0236916125546571 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.92483653930475 | 8.10035622429584e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.77810209201275 | 0.000175325454414231 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.75221574697732 | 0.000686057444192078 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.0410906690816 | 1.39755531855908e-05 |