Chr:
Chr7
Start:
28495758
End:
28496727
Strand:
-
Ref_name:
OSA-LNCN6767
Sequence
(OSA-LNCN6767.1):
CCAGAUAUAAACUUCACACUUCACAUCCAUUGAGUAAUUGUUCAGUUAUUAUGAUGGCUAAUUCGUGUCAACACCUAGUUGAUCACCCAUACACGCGUGUCAAAGGUUGCAGCUGUAGUUUUGCGAUUGCGGCAAUUGAGUGGGGUGUGUGUUCGUGUCAGGUUCUGAAGCUAAAGAAGAGUUAAUUAGAACGUGAUCUCCACUUGCUAAUUUCGCUCUAGUUUCUGCCAAUGCACCAUUGUCGUGCAGCCACUCACACAUCUGCGUGCAAGUCCCAAGGUCUUGGCUGACUUGGGAUGGAUUAACAAGCCACCACUUGGGCCACUCUUGAUCCUCUCUGUCCCCUACCAAACCCCAGAACUGACCAUCUUUCCAAGGUACUUGGGACUUGGGAGUAUCAGUAAAGUUGAAGAGGCGGAUGAGUGAUGAAGAAAUGAUUAAAGGAGCUGAGAUGAGCACAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.17%
ME_num:
MEP:
56.71%
HE_num:
HEP:
19.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.68
Avg Expression:
8.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.52823591496848 | 0.00203146185667057 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.26915755427858 | 1.1629666051809e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.54976455360996 | 3.81816998384567e-09 |
| 4 | IR64NIL // root // control--/--IR64NIL // root // Al | 1.78766058511822 | 4.5197917634876e-05 |
| 5 | Azucena // root // control--/--Azucena // root // Al | 1.82937849504937 | 8.04474236547194e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.47500638905019 | 4.17447472158721e-06 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.47295946821119 | 0.0481977236535019 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.3523742775945 | 4.97554422079704e-13 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.80241043328338 | 0.000219125620072687 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.35024367265867 | 0.00106684981111549 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.35005856493206 | 1.8171740323473e-07 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.34484385027645 | 0.00418677286456203 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.38227242255892 | 2.9116628385221e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.52218743932167 | 7.68793691246524e-10 |