Chr:
Chr7
Start:
28238742
End:
28239622
Strand:
.
Ref_name:
OSA-LNCN6758
Sequence
(OSA-LNCN6758.1):
CCCGCACUUUGAUGUCCAAUAUUGAUUUUACCCCUAUUUUUUAGGGUUUUCGUUUUUGCCCCUAUUUUUUUAACCGAAGGUAAGUUUUACCCCUACUUUCAAUGGACAAGCUAACAUCGUUAAAUCUUUGAUGGAAAGACAUUUCUACCCUUAUUGUGUAGUUCAUUUGCCUUCAUCAAUUGUGUAUUUGCCCCUAAUUAUUGUACCUAUAUUCUACAAUUCUCACUAACUUGUACAAAUAUGAAAAUUUUGACAUACUUUUGCCACAAAUUUGAUAAAAUUUAGACAAAAACUGAAAGAAUUUAGGCAUAAUUUUGACACUUUUUCUUUACAAAACUAGAAGACAAAUAGCAAGCUGCAAUCAUCCCAAAAUCAAGCAGAUCCAAAUCACAAAUUAGAGCAACAUCCCCUGUCAAAAAAAAAGAAGAAAAACUCAAGCAACUCCUCCCAGCCGCCAUCGCCUCCAGUGCCGAGCCGCGGCCGCCAUCGCCUCCUCCCGCCGCCUAGCCCGCGCAGAGCGCGCGCCUGCUCACCAGCGAGAGGAGGUGCGCAUGGCCGACGCCCGCUCGUCGCCGCCGCCCACUCGCUGCCGCCGCCACCAUUGCCUGGCUGGGUUGCCCCCGUCGCCUCCUGCGACGAGCCGCCGUAGCCAUCGCCUCCUCCCGCCGCCUAGCCCGCGCAGAGUGCACGCCUGCUCGCCGGCAGGAGGAGCUGCGCCUGGCCGCCGCCCGCACGUCGUCGCCUGGCCGCUGCCCGCACGCCGCCCAAUUCGUCGUCGCCUGUGCUGCCCAGAUCGGUUUCGAGAGUGACCCGCGUGCGAGAGGAGAGAAGCGACUAGUAUAGGGUUAGAUAUUUCCCAGGGGUAAAAAGGUAAAUCACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.8%
ME_num:
MEP:
61.59%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.79
Avg Expression:
7.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | 2.16835105240475 | 0.0341022618377557 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.37973128840061 | 1.45938533542079e-08 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.97372475908524 | 3.20279995006268e-05 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.08027926553847 | 0.0133065621005862 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.91948357730647 | 6.09067765385735e-05 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.72413330956348 | 0.0103736161859359 |