RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6750

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

27639940

End:

27641157

Strand:

+

Ref_name:

OSA-LNCN6750

Sequence
(OSA-LNCN6750.1):

UCUUUUUUGUAAAUUAUGCCAAAGUUCUACGCAAUCAAAUCGAUGGAUGGGCACAUGGGCCAAUCAAUUCAUGCGGCAUGGGCAAAGAGUAAGGUUGUGCAGCAAAGCAAAUCACUAAUCAGGUUGGUUUAACAGUUGGUGGAUGAUUGAUGAAACACCAAAAGUGUCUCCAAUAAUGGAUGUCAUGUUGAUGGCCUAAUCAUCUGUCCAAGUUGGUGUGAUCGGUUGGUUUCACUGUGAUGCUUGAUACAUUGUACUACUGGCCAAAUCAUGAAAAAAAACACUGAUGAAAUCGUUGUCCCUGACCAAAGCAUUGUAAGCUCUAAUGAUGCUAACAUAGUAGUAGUAAAUACUGGUCCAUUUAGCUGUGAUUCAGCUGAUGAGCUACUAGAGAAAAAUGAGCUCAAUUUUCUCUUUUCCAGCUGGUUUGGUUUGGGGCUAAAAUUGACCUUACCAAUUUUUGCCAAUGCCAAAUUUUGGCAAGACAAAGUUGUGUUUGAUUGAAGCUGAGGUUAACUAAUGAUGUUGCCUACCAUUUAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

110

LEP:

22.36%

ME_num:

304

MEP:

61.79%

HE_num:

77

HEP:

15.65%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_differentiation_zone

Tau :

0.87

Avg Expression:

20.57

Tip: OSA-LNCN6750 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
19311 // leaf // control--/--9311 // leaf // salt-2.104498392792970.0440138190018922
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN3.872298663370414.50375909066981e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN3.235462429723260.000311015179582806
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN5.281997325545896.24906087889626e-13
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA4.662114206769432.27342502658756e-08
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN5.284603822499965.80911491455531e-13
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA6.517498149288416.06285037600958e-21
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA4.786573357305525.282844443197e-11
9Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-1.648396442215220.00127960611788107
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.868517481810460.00880478175684977
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.954786995680110.000222306635090776
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA6.663595920024486.57019580092217e-23
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN4.900299426121611.45503726392271e-11
14Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-2.621694176514810.00038971462215555
15Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.247384142261630.000937353855437854
16Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105-2.051495889944480.000111670698140546
17Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-1.499704418565610.00736589906990432
18Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-2.04081452119170.00185199541478609
19Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-2.123475177864813.71177135709719e-05
20Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.430287150306851.26527793198711e-07
21Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA5.858785274611491.34865900755485e-16
229L136 // leaf // control--/--9L136 // leaf // salt-1.64404920419680.0124642196235411
23Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-2.31706252628765.85822528845404e-08
24Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA6.155825567177292.82411541370428e-19