Chr:
Chr7
Start:
27579857
End:
27580539
Strand:
-
Ref_name:
OSA-LNCN6749
Sequence
(OSA-LNCN6749.1):
CUCCAAUUAGUUUUAAAUAUUUAUAAUCACAACAAAGAAAUUAAAACAAUUGCUGGCAAGAGAGAAACAGGGCAUGCAAGAAAUGUAGAAGAAGUUAACAGUACAUGGAAGAUUGUAGACUUUUCUAACAAAGAUAAGUCUGUUAGGUGUUAAGGAACUAGAGAUCUAACAAGACAAUAAAAUCUUCUACCUCCGUCCCAAAAUAUAAAGGAUGCUAGCUAUGCAUCCCCCCUCUUCACUUGACGCUGUUAUUCCUGAACUAUAGCAUUCAACACGGAUGCAGAAAGCCAAAGAAAUACCCUUGUGAUGCUAGAAGGACAUGUAUUUCAAUGUACUGAAUAAUUCACACAACAAUGGAUAGGCUAAAUAGCUAAAUCUCCAACAAUCCUAAAAUUCUAAAAUGACAAGGUGACGUAGCAGCCUACAGUUAACUCGGUGUGACAAUCAUCAACGGGAGAGUGCAUCCAAUCACGGCCACAAACAAAGCUACAUUUCGGAGUUCUACUAAGUUGCACAACACUACCGAUAUUGCACAUUCUUUUUGUUAAAUAAAAAAAAAGUUGCGACAUGAUCGUAUCUGAAUCAGCCCCGAUAUGAAGCAAGCAAAGCAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.28%
ME_num:
MEP:
49.19%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.86
Avg Expression:
5.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.9098334385831 | 0.013926888065255 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.82938497972511 | 0.0496542732850676 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.10129486409607 | 3.63581309073158e-06 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.71229481605735 | 0.00134882376743762 |