Chr:
Chr7
Start:
26694916
End:
26699941
Strand:
+
Ref_name:
OSA-LNCN6738
Sequence
(OSA-LNCN6738.1):
UUGCAAGUUAGUUAAGAUGGUAUCAGAGCAAUGGUCUGAACCCUAGCUGCCAAUUCCCCAUCGCCGGCCGGCGCGGCGGCGUGCCGCCGGCGUUUCACUGCUAAGCAACCUCCUCCAAUUCAUAUUUAUCCACUGCUCCACUGUCCUUUUCACCGUCGCCUCGUGGGCUAUCGGACCCCAGCGCGAUUUGUCGUUGACCGCCGUCGCCGUCGCCGCCGCCGCGACUUUGCCCUUACCCGCGUGGGCCUGCAGUUGCGCAGCCGCGCGUGGACGUCGUCCAACUCUCCGUCCGCCGCUGUCUGCGCGCUUGACCAUCUACAUCGUUGCUGGCUUGCUGCACAGAUGUGCAUUGCCAUUCUUUCAGGAUUCUCUGUGGAUUGUGGCCAUUGGAUGAUACACAUUCUGCCUCAGCAUUGCAGGGUUUAUUAUCUGCAGAUGAUCCAGCUAGCUAGCAAGCAGGAAACUGUGCACUUCUGGCAGAGUAAUCAGCCAGUCAGGUGUGUGUAUGGCUGUUCAGAAUUAUGCAAACAUGUUGCCAAUGGGGAGAGAGAUUAGCUAAGCAUGUGCAGCUGCAUAAUGUUAAUUGGAUAGAAAAUUCUUAAAUUCUCCCUCUCAUGUGGAUUAUAUGCCAUACUUAUACACCCAAUCAUUGGGCAGCAAUGCCAAUCUCCUCUCUUUAUGUGUCUAUGUGUGCCCCUUGGGAAUCUCUGCAGCAACAGCACAGAUCACAGCCAGUGAGGCCUGUAAAGUCAGUAAAGAAAGAAAGAAAAAAAGAGAGAGAGAAACCCUAUGCAAUCAGAGAUGCAAUGCUGCUAGCUGC
Sequence
(OSA-LNCN6738.2):
CUUUCUGAUCAAUGACACGGCAUGCAGCACGAACAAAUUAACAAAGGAAAACACCACCUUCUGAAACUUUUCUUUGACCAAACACCUCACCUUCUUGGCCGGCCGCCGGCCACCGGCCACCGGCGGCGGCCUGUUCCGGCGGCCGGUAGCCCGGCUGUCACUGUACCCGGACCAGAAGGGAUUUUCUUGAUACCUGCACAACUGUAUAUGUAUUCUGGUAGCUCAGGACCAUUCUGACAAUGUGCAUUGCCAUUCUUUCAGGAUUCUCUGUGGAUUGUGGCCAUUGGAUGAUACACAUUCUGCCUCAGCAUUGCAGGGUUUAUUAUCUGCAGAUGAUCCAGCUAGCUAGCAAGCAGGAAACUGUGCACUUCUGGCAGAGUAAUCAGCCAGUCAGGUGUGUGUAUGGCUGUUCAGAAUUAUGCAAACAUGUUGCCAAUGGGGAGAGAGAUUAGCUAAGCAUGUGCAGCUGCAUAAUGUUAAUUGGAUAGAAAAUUCUUAAAUUCUCCCUCUCAUGUGGAUUAUAUGCCAUACUUAUACACCCAAUCAUUGGGCAGCAAUGCCAAUCUCCUCUCUUUAUGUGUCUAUGUGUGCCCCUUGGGAAUCUCUGCAGCAACAGCACAGAUCACAGCCAGUGAGGCCUGUAAAGUCAGUAAAGAAAGAAAGAAAAAAAGAGAGAGAGAAACCCUAUGCAAUCAGAGAUGCAAUGCUGCUAGCUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.45%
ME_num:
MEP:
56.1%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
3.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.11688960778622 | 0.0415570090501889 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.48345225747561 | 0.0208293367258305 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.96011590991136 | 0.0481508585569328 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.37175798795803 | 0.00806371913313692 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.99772621154598 | 0.00341009214956518 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.22517632271502 | 0.0125415118847854 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.91815699202681 | 0.00196329621455476 |