Chr:
Chr7
Start:
26546277
End:
26546962
Strand:
-
Ref_name:
OSA-LNCN6735
Sequence
(OSA-LNCN6735.1):
GUACAUAAACUAAACUUGUACAAAGAAGGGUCGCAUUCUAUUUGGCUUGCUUGCUUCGCUGCGGGCGCUUGGGCUAUUUGGCUCAUGAGAAAUGAUUGGGUGUUCAAUGACAAGAUGAUUUCGGAUGCCUCUCACUUGCCUCAUAAAGCUAUCUUAUUUCUUUUACAGCGGAGAAAAAAAUGGCGUCAGCAAAGGAGAAGAGUUCUUUGAAUGCUACAAGGGACUCACUGCUUGCCAGUACCCGAAGGACUGUAGGAGCAAACACCUGAAGCUGAAGAACUGAAGAUCUCUAUGCCUAUCAGUUUGGGGAGCGGCAGCGGGCAGCGGCGUGCGUG
Sequence
(OSA-LNCN6735.2):
GGGGAAGUCGAGGACGUGGACCACAUGAUGUUUAGAUGUGCCAUUCCUAGGUUUAUGUGGUGCUGUUAUAGAGAUGCUCUAGGUUGGGAUAGUAUUCUCAAUUCUAGAGGCGAACUGCGGAGAAAAAAAUGGCGUCAGCAAAGGAGAAGAGUUCUUUGAAUGCUACAAGGGACUCACUGCUUGCCAGUACCCGAAGGACUGUAGGAGCAAACACCUGAAGCUGAAGAACUGAAGAUCUCUAUGCCUAUCAGUUUGUUCGUAGCUUUAUCUUCUUCUUGUCUAGUUUCCUGGCUUGUUCCUAAGAUGUGCCAGCAGCUAAAGUGCCUAACUUAUGUGUGCUGGUUUCAUUCCAGCCUUGUUUUUGUUCUUCCGUUUUCAUGUAUGAACUAUUUCGCUUUUUAAUGAAAACCGGGCGUUUAACGCCUUUCCUCCAAAAACAAUUCUAAUCAGCAAUUUUCUUAUCUUUCGUUUUUAUCUUUGCUGUUGAGGGGGAGCGGCAGCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.45%
ME_num:
MEP:
7.93%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
1.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.78461242382192 | 0.00021263574725744 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.91870381333891 | 0.00118389291142294 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.03168542063173 | 6.22732152549884e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.04236041741442 | 0.00297693140382608 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.28593140154388 | 0.00092624193254388 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.45259457629017 | 0.000628099101898009 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.17577396421081 | 0.000498739660134617 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.39590242600751 | 0.0246247703324143 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.84408323710603 | 8.70515060369945e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.31864370157864 | 1.94789481783037e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.74089636612462 | 0.000229122590574802 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.45338723258152 | 7.79960444949209e-06 |