Chr:
Chr7
Start:
26262106
End:
26263098
Strand:
+
Ref_name:
OSA-LNCN6728
Sequence
(OSA-LNCN6728.1):
CUGUAACAAUAAUAAGGUUAGUACUACAAACUACAAAGUCGUAAAAGUAGAUGAGCACUGCCUCAAAGUUCAGAGAUGUAUACGUCUCUGAAUUCUUCAGAGAACAAUGUAUAUAUUCUCUCAAUGAAUUCAGAGAUGUAGCAUAGACAAUGUAAGAAUCGGGACCAUGAACAUAGAACUUGAUGCUUUCGGACCAAACUGCAUAUUCGCACUAUAAUACAACAGAAGUCCAGUAAGGUACGUCUUUGGGAGAGGGAAUAUAAUGAAUUGCGUCAUGUCAGGGACGAAAUUUCAGUCCCUAACUAUUGACUCACUAUCAAGUGACAUGAUUCUGUCGGCACGAACUUAUGUCAUUAAGACGCUAAUUGUUUAAUUAUAGUUCAAGUUAUCCUGACAUAACUUGGAAACAUGAACUGGAUUUUUUUUUGAACGAAUCGGCGAGCCGCCAAUUCCAUUGAAUGGAGAAGGAGCAAACCGGAAAUUCUGGGUGCAAUAACAUGGAACCGCCCGUGGAAACUAAAGCUGUGGAUUGUUGGUAAAACGGAAGCAUCUAGCUACAUGACCACUUAAUUGUUCAUAGCACAUCAAAAGAUUCUACUUUUUGUAUCAGGACAAAGGGAAAAAUCAAAGGGUAUCGGAGAAGAAAGCCAAGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.11%
ME_num:
MEP:
54.67%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.75
Avg Expression:
2.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.08454559608592 | 0.000321148535681094 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.39860598720455 | 3.3201614205299e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.37405957232471 | 0.00441381390342952 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.33505683867246 | 0.0203117478636317 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.6850104902776 | 0.0045432445150908 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.43172973132845 | 1.90519447094629e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.05257102667358 | 0.0493703970009795 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.42502151974773 | 8.39624990724479e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.73379031671831 | 0.000198086123033734 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.6446753213175 | 0.0301532040219774 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.47836780900454 | 0.000161995338647261 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.23101519608113 | 2.42607895662441e-06 |