Chr:
Chr7
Start:
26128955
End:
26131573
Strand:
+
Ref_name:
OSA-LNCN6723
Sequence
(OSA-LNCN6723.1):
CAACGUCGUUUCUGUUUCUCUCAACGAUUAUGCCUCCUGGGCCUCCUAUCUAGGCACCUCACCGAUUGUAGAAGUGGCGGCGCGUGUGGACUAGGGUUAGGACUCUUCACUCCUUCCCAUCCCGAUGUUUCGGCGAUCAAGCGCAAGGCAGCAAGGGCGGCGUGCUGGCGCGGCGGCAGGCGGCGGGGUGCGGUGACGCGACCGGCGUCAGCGUGCGGGUGUGGCGACUGAUGGCAGCAGCUGCGACCUGUGGCCUGCGGGCAGCAAGCAACGCAACCAUGCAAUCUGCAAGGAAAGGAAGACUAAGCAAGAGGGCCCUAGGGCAGGGAGUACCAGCUGGAAGGCUCAAGGGGAGGAACGACCUGAAGAGGAAGACGGCAACAAGGCUGACGACGUACAGUCUGAAGACGGGUUGGAGGAAGACGCCUUGUCAAAGGGAAAGCAUAUCAGGCUAAGGAACAAGAAGUAUACGGGACCGGACUGGGCUGUAUGAGCCAUCUCUAUGUAUCGGCCCUUCUUGGCCCAUGUAAGAGAGAGAGAGUGUGUGUGUCUGUGUGCGUGUGUUGGUGGGGAGAGGAAAUCCUAUGUAUACUCGAAACAACAGCUGUAAUAACUUGGCUAUGAACUCGGCGGCAGCGAUGGCGGCGGUGGCUCGGUCCGGUUGGACGCAAGAGUGAUUCUUACCGAGUUCCACAACUGCAUUCCUGUUCUGAGUGUUCUUCCCUUGUGUUGCGUGAGUUCUUGUUGGGGUUGUAUUAACAGUGAAAUUUGGUAAGCCCGGAGUAGUCAUCGGCUUAGAGUCAGCAUCGGCUUCGAAGUCCUGAGAUUAGCCGAUGAGAGUUGUCAAGUCGUCAGUUGUCGGAUUCUUGCUAUAUUCGGUUGAGGAAAUUGAUCUACUAAAGGAAGCUUAUCCAGAAGAGACCGAGUUCAAAGAGAAUGCGGCAUGGCAAGUUAUCUAUUAAUUAGGAAUAGUUUGUUAGUUUCCUUUAUCUUUAGGAAAGUAUGUUUAGUGUCCUAUAAGGACUUUAUCUUUUCCUUUUAUCUUUAGGAAAGUUUCUUUCUUGUCCGACAAGGACUUGUAUCAACCCAUGGGUAUAAAUAUGUACACCCGGGGUCUAUGUAAU
Sequence
(OSA-LNCN6723.2):
CCUGGGCCUCCUAUCUAGGCACCUCACCGAUUGUAGAAGUGGCGGCGCGUGUGGACUAGGGUUAGGACUCUUCACUCCUUCCCAUCCCGAUGUUUCGGCGAUCAAGCGCAAGGCAGCAAGGGCGGCGUGCUGGCGCGGCGGCAGGCGGCGGGGUGCGGUGACGCGACCGGCGUCAGCGUGCGGGUGUGGCGACUGAUGGCAGCAGCUGCGACCUGUGGCCUGCGGGCAGCAAGCAACGCAACCAUGCAAUCUGCAAGGAAAGGAAGACUAAGCAAGAGGGCCCUAGGGCAGACUAAAUAGUUUUAGAGCUCAAGGGAGUACCAGCUGGAAGGCUCAAGGGGAGGAACGACCUGAAGAGGAAGACGGCAACAAGGCUGACGACGUACAGUCUGAAGACGGGUUGGAGGAAGACGCCUUGUCAAAGGGAAAGCAUAUCAGGCUAAGGAACAAGAAGUAUACGGGACCGGACUGGGCUGUAUGAGCCAUCUCUAUGUAUCGGCCCUUCUUGGCCCAUGUAAGAGAGAGAGAGUGUGUGUGUCUGUGUGCGUGUGUUGGUGGGGAGAGGAAAUCCUAUGUAUACUCGAAACAACAGCUGUAAUAACUUGGCUAUGAACUCGGCGGCAGCGAUGGCGGCGGUGGCUCGGUCCGGUUGGACGCAAGAGUGAUUCUUACCGAGUUCCACAACUGCAUUCCUGUUCUGAGUGUUCUUCCCUUGUGUUGCGUGAGUUCUUGUUGGGGUUGUAUUAACAGUGAAAUUUGGUAAGCCCGGAGUAGUCAUCGGCUUAGAGUCAGCAUCGGCUUCGAAGUCCUGAGAUUAGCCGAUGAGAGUUGUCAAGUCGUCAGUUGUCGGAUUCUUGCUAUAUUCGGUUGAGGAAAUUGAUCUACUAAAGGAAGCUUAUCCAGAAGAGACCGAGUUCAAAGAGAAUGCGGCAUGGCAAGUUAUCUAUUAAUUAGGAAUAGUUUGUUAGUUUCCUUUAUCUUUAGGAAAGUAUGUUUAGUGUCCUAUAAGGACUUUAUCUUUUCCUUUUAUCUUUAGGAAAGUUUCUUUCUUGUCCGACAAGGACUUGUAUCAACCCAUGGGUAUAAAUAUGUACACCCGGGGUCUAUGUAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.87%
ME_num:
MEP:
6.71%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 6.34268531275548 | 2.97431045498316e-05 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.80850027994244 | 0.000115171055107644 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.86070282153495 | 0.00200689870861543 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 5.10080829587166 | 0.00156765434325517 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 5.0328083097871 | 0.00678354269599749 |