Chr:
Chr7
Start:
25958044
End:
25958808
Strand:
+
Ref_name:
OSA-LNCN6722
Sequence
(OSA-LNCN6722.1):
CUUGGAGAAUCUAAUUGUUGAUUUAUUCUUUCAUGCAAUCUUUAAGAGCUAGAACAAUGGUUCUAAUGCCAGAAGUAAGUUGAGUGAAGAUUUUUAUUAGUUAUUAUAGCUGUCCAUGAAACUGCAGUGGGCUAUAUCUACAUGAAUGAUUAUUUAGAUGUGGACAAAUAUUGACUGAUGACACAUGAAUUUCAGCUUGGUUUGUUGGAUUUAAUAUUUUAUUGUAAUUUGUAAGAAGUAAACUGGGUGUAAGAAUCUACAGCCUCCCUUCAGACUACUGAACUGCACAUAUAAUCCAAAAGUUUUCAGGCCCCAGGGCAAACGAACAGGAAGAUGUAAGGUGAAAAGCCUAUUAAUAUGCAAACCAAUGUCCUUGUGUGGGCAAGCAUGAUCUUACUGUUCACUCAACUGGCUACUCCUGACCUGACCAUUUUAGCCUAUAUUAAUCUGACCAUUUACACACUAGAAAUUAACCUGAUGACACUUUAUCCUACAUAUGAUUGUAAGUAAUAGAUUGGCUGAGAUCAUCAAUGAACAGGAUCAGAUAGGGAUAAAAAAAAGUAGUAUUUGAUGCAAUGCCAAAAAAGAAAAUGACGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.76%
ME_num:
MEP:
13.62%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.03912687640873 | 0.0275489624915778 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.84358222853983 | 0.0213077271010048 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.78054653213249 | 0.0341757576762942 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.68345949731705 | 0.0496216600108127 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.1257736642804 | 0.045900536598985 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.37961837427402 | 0.00295578177988243 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.97022799856797 | 0.000601064266596254 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.88259960842045 | 0.00139707012860578 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.40142449406732 | 0.0318427394752763 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.32496993932551 | 0.0279813744208573 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.71259686300256 | 0.0124728472234564 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.7125241655745 | 0.0125857403075368 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.71239940511643 | 0.0125088643803342 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.52233593489036 | 0.0217953882591609 |