Chr:
Chr7
Start:
24935867
End:
24936496
Strand:
+
Ref_name:
OSA-LNCN6705
Sequence
(OSA-LNCN6705.1):
UGCAGCGAUGUGAUCGAGGGAUUAAAAGAUAGAACCAGAUGAAAUGAAGCCAGUUUCUGAAGAAGAAAUUCAGUGGGCGAACUUGAACUAGGAAAUCGAGUGGGUGCUUCUUUCGAGAGCAUCAAAAGAAAUAUGAAAAGGACACUAGCUGGGAGCGUGUAUCUUUUGUAUCUUUGUUCAAAAGAUUGUUUGAAAACGAAACCACGAGCUGGGAAAAGAAAGAAAAAAAGAACGUGUGCCUUGAUCUUCGCAUGAAAGUGGCUUGCGACAAGGAAAGGAGUUUUGGGUGGUCAGAGAUAGAGAUAUUUUUGCUUGCUCUGCACUUCAUUUCUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.01%
ME_num:
MEP:
33.74%
HE_num:
HEP:
28.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.78
Avg Expression:
24.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.53939462124439 | 6.61304965329274e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.72572349502355 | 1.93919500195733e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.83734854747272 | 7.66187224075355e-24 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.63256900969285 | 0.0282315845168183 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.51662356817366 | 9.56723963016454e-19 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.76108261745083 | 0.00160814310094953 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.2992065645761 | 0.0319931922777122 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.49026952394274 | 1.80292431616797e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.83440631528312 | 2.71594621715338e-12 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.57246211552742 | 0.0435526915983873 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.51829630131769 | 3.52313657319324e-20 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.68972582164165 | 3.40604008551546e-25 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.14006269263332 | 1.79452152543884e-17 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.84362024590415 | 2.37962591179784e-11 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.06095120836029 | 2.93635087823612e-16 |