RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6696

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

24346894

End:

24347700

Strand:

-

Ref_name:

OSA-LNCN6696

Sequence
(OSA-LNCN6696.1):

CGCACACACGCACACUCUUCCCCUCUCACUAGUCAUGAUGCAUCGCACUGAGAAAGCGAGAUGGUCAAAGACGAGACAGCCAAAGGGAUCGAACGUUUUUUGGGCCAUCACCAGCACACACACCACUUUGCACGCAUACUCCAUGCAACGGGGAGGAGGGGGACAAAGGUGUUCGAACAGAAAGCUCUCAUGGAAAGCACACGGUCCAGUCCAGGCAAGAUGCUGCUGCCGCUGCCUGCUAUCGAAUGAAAUCCGUAUGGAGCACUACUCCAUCCAUCCAUCUGCAGGAGGCGUGCACGCGAAACCAAAUGGGAGACAAGAAGAAAAGAGAAGAAACGCGUACUGAUUAAUCAUCUACGAGGGCCAUUUGAUUGUUAGCUGGUGUUGCUAUUUUAGGGUCUUCUUAAGAGGGUAGUGGGGCUCUGUCCCUCCCUAUUUUUUAAGUUGCGUUUAGCCACCGUAGUAGUUUCUUUCUUUUUCUCGUUUUUUUUCUCAUUUUUUCUUUAUUUUUUUGGCAUAAGUCGGUCUGACGGAUUGCGGUGCGUAUCAAACGCUCUUUUCUUUUAAUAUAUUGACAUAUAAUUUUUUUUACACGUUCGCGAAAAAAAACAUUAAUCCUAUUUGAAACAUCGGGAUUUGAAUUUGCUGUAUGAGUAAUUUGAAAGUUUUCACGAGAUGAUUUUGGAUUGGAUUUGCCGUUUCGGCAUGGGCUUCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

420

LEP:

85.37%

ME_num:

66

MEP:

13.41%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.92

Avg Expression:

1.48

Tip: OSA-LNCN6696 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-3.290383518921890.00327522445014739
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-3.515655694733830.0145720497749963
3Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.138846787237810.0309462639845689
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.385289401883410.00501254219363197
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-2.261023106616420.0344486367970139
6Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day2.695648253475130.00737228937892278
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.10805421606740.00653011939939508