RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6695

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

24262453

End:

24277862

Strand:

+

Ref_name:

OSA-LNCN6695

Sequence
(OSA-LNCN6695.1):

UUCUUCCUCCUUCGUUCCGUGCUUGAAGAAUUUGCCGGCGGCCAUCGCCGGUUUCACCGGCGCGCCAGCGGAGGUGAGGAAUCGGGGCGAGAUCAUCGUCGGCAGUGAGUCGGGGUGGGCUGGCGGUCGAGAUGACGCAAGCGACGUCAACGCGAGACGGAUCCUGGGUGCUACCCCCUCUCCCGACGCGAGCUACCGGCGACCGAGACGACGUGAGCGACGACGGCCAUGGACGGCGUGGGCAGGCAUAGACACGACCACCGUCGCCGCGCGGAGCGAGCGGAUGGCGGGGAUCGUGGUAGGACGAGCUUGCUGGAGAUGGGAGGUGGUGCGGAUGUCCUCGUCGCCCUGGGACCACGCUGACGAGUGCCUGCACCUUCACUUCAUCCUCCCCCGCGUGCUCACGUGGCGGCGCUGCCGGAGCUGCUCGCCGCGCCUUGACGCCGCCGCCGCCGUUUUCUUGUUCCGGAGUUGGAAGAGGUAGAGUGACAGCGGUGAAGCCGCCGCGACGACGGAUACUCUUGUGCCACUGCCAUGCGGGGCCACUUAAAGUGGGGCCCAGCGUCAGUCACGUGGGGUAGGGGUGGGUUCGUUGCGAGGGUAGAGGAAGGCUGGACCUCGGCGGCUGUGUCGGUACGUGCGUGUCCGGGUUUUCAUUUUCUUUUCUUUCUCUUUCGUUUUUUUUUUACUUGAGGGAGACGGGAUCUCAUCUGGUGAGAUAGAUUCUUUUACCGCCACCCCCCUAAGUUCGCGGGAAAUGCGACUAUUUUUGGGAUUAUCACGUGUUGCUGGUCAUUUUCUUUACCGUUAAUUUGUACUGGGAAGGAAUUUAAGCGCAGCGCAUGUUUGUCCAUGCCAGUGAUUAGCAUUGACAGAUGUUUUCUAGUAAUAGAUGAUUUGUGAAAUUGUUGGCAUUAUGUUAUUUUCAGUAGGAAAAAAUGAUGAUGGUGACAGCUGUGUCCUGGAUGAACUGGGCUUUAUUCAUUGUGC

Sequence
(OSA-LNCN6695.2):

GGUGGUGGUGGUGGUGGGCGUGGAGAGAGAGGGCACCGUGGGAUUGGGACUUCGUUUCCUCUCUACUGCCUCCUCCUCCUCCUGCUCGCUUCGUUUGAACUCCACUUUAUGACAGCGGUGAAGCCGCCGCGACGACGGAUACUCUUGUGCCACUGCCAUGCGGGGCCACUUAAAGUGGGGCCCAGCGUCAGUCACGUGGGGUAGGGGUGGGUUCGUUGCGAGGGUAGAGGAAGGCUGGACCUCGGCGGCUGUGUCGGUACGUGCGUGUCCGGGUUUUCAUUUUCUUUUCUUUCUCUUUCGUUUUUUUUUUACUUGAGGGAGACGGGAUCUCAUCUGGUGAGAUAGAUUCUUUUACCGCCACCCCCCUAAGUUCGCGGGAAAUGCGACUAUUUUUGGGAUUAUCACGUGUUGCUGGUCAUUUUCUUUACCGUUAAUUUGUACUGGGAAGGAAUUUAAGCGCAGCGCAUGUUUGUCCAUGCCAGUGAUUAGCAUUGACAGAUGUUUUCUAGUAAUAGAUGAUUUGUGAAAUUGUUGGCAUUAUGUUAUUUUCAGUAGGAAAAAAUGAUGAUGGUGACAGCUGUGUCCUGGAUGAACUGGGCUUUAUUCAUUGUGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

130

LEP:

26.42%

ME_num:

339

MEP:

68.9%

HE_num:

22

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.86

Avg Expression:

8.79

Tip: OSA-LNCN6695 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.585299787403920.00148825146747718
2BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs1.897528684768124.25744569234164e-06