Chr:
Chr7
Start:
24069866
End:
24070684
Strand:
-
Ref_name:
OSA-LNCN6691
Sequence
(OSA-LNCN6691.1):
GUUGAAAGAACGGGAGCUGGGCUGCAGUGGAAGACGAGCGGACGGGAGUGGAGGUCCGCAUGUCCGUCGAGGCGGAGUUCGAGCUUACCUGACCUGCCCCAAGUUGAGCAUGCGAUGGAACUCGGGGAGACAAUGGCGACGGCAUUGAUGGACUGGUAAGCGACUCACUUCCGUUGUUUAGGUGAGCAAUCGAGUCGAAGAAGCAGAUCAUCUGUCUCAUGCAGUCCUACCCGAAUGCGGCAAGGGAAGAGGACACGCAGCUGUAGCUCAGAGCUCGAGCUCCAGGCAAGGACAGCCACGAGACAGAGUUUGGCACAUGCCGACAGAGGUGGAGCUCCACAUGCGCGGCGGAGGCCGAUGAGGAACACUCGGGUCUCAGGGAGGCACGGAUCUCAAGCUUGAGCUCACCUGUGCCGAGAUACCAAAGGAAGGGCUCGGGAAUGUGCCGCUCAACCUUGACCUCGCCUGCGCCAAGCUGCCGGAGAGUGAGGCGUAGUUCGUUCUGCUCCAGUAGAGAGAAGGAAGAAAGGAAAAAUGACAGGUGGUCCUAGGUUGACUGGAUUGCCUCCUAAGAAAAAACCAGAGCGGUUUGGAUGAGGGGUAUAAAUUGCAUGGUUUUAAGAGAUGAGGGGCGUCUAAUACCCGAUUUUAAAGUUAAGGGUGUAUUUUAGAUAAAUAUAAUAGUUGAGGGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.29%
ME_num:
MEP:
30.28%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.85
Avg Expression:
3.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.86542072039548 | 0.00142499714753623 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.1060428759152 | 0.0293520633165449 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.13225787396218 | 0.0193100065260255 |