Chr:
Chr7
Start:
23726222
End:
23727466
Strand:
+
Ref_name:
OSA-LNCN6684
Sequence
(OSA-LNCN6684.1):
CGCCUGUGGUUUAUCAAGGUCUCGUCUCUCUCUGCUGUGUACGAACAGCUUGCAACAGCGAGGGCACAUAAAUUCAUGGAUAUCUCAAUAGAAGCGUAGUACUAUCAUACGGGCUUAUUGCCUGUGUGCUGGUAGCCUGGUACAGAAAGAAAACAAUCAGCAACCAGCUUCACUUUGAGAGACUGUACAGCACUCGGCGAGAGCAACGAAACGACACACACGGGAGCCGCCUCCUACCUGAACUUGAAGAGAGAAAACAAUCCUCGACCGUGCGCGUACGGCGACGGCGUGGGGGUCGGGACAUGGGACUCCCUCGCUGGCGUGGCGAACCACCGCUAGAUUGGCAGCAUAUGCGCGCGAGGCCGGCGGCCGCGACCGCGAGCGUAGUGCGUCUUUUUUCCGGCACGGAGACGAGGGAUGCCGUGGAUGCGCAUGCAUGAUUGCUGGGCCGUAACGGCAUGGCCAUGUGCGCCGCGAGAAAAUGCAGCUGCGUUGUACCAUCAGGGCUACUGUGGAGUGGUGGGGCGGCAACUCAUCUGCUGUUGGGAGCAGGGUUUACUGUACCUAACUGUAAAAAGUCAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.5%
ME_num:
MEP:
17.48%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.06512083881947 | 0.000564224606484425 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.5169891227691 | 1.97032918373487e-05 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.63728795107109 | 0.0179788391597402 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.44341496275258 | 1.11358140519181e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.70183320614374 | 0.0339381426290711 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 7.22010858935646 | 0.000207546779180787 |