Chr:
Chr7
Start:
23644470
End:
23644827
Strand:
+
Ref_name:
OSA-LNCN6681
Sequence
(OSA-LNCN6681.1):
CGACGCGAUCCGAUCCGAUCACGCGAGGAACAAACAAAAUCAUCGCUUCGCUUGGUCUUUUAGCCGUCCGCUUCACGACCUGCGGGAAGCAGCAGCAGCAGAGCUACAGUAGUGGAGCGGCGUCGAAUCGAAUCAUGCUGAUUGCUGCGUGACUCGCCGGGAAAGGUCGUGGUCCUCGUGGACACGGAGCCUAGUGAAUUAUAUACAAUGCAGGGCAUGCAGCCGGGAGGAAUAACGCAACACGCAUGUUGACACGGAGAAUCGAGAUCGAUCUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
5.08%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
0.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 4.12771335092027 | 0.018370448853779 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.8354426925125 | 0.0281832168611585 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.11500259639453 | 0.011653342366144 |