Chr:
Chr7
Start:
23295388
End:
23300099
Strand:
-
Ref_name:
OSA-LNCN6675
Sequence
(OSA-LNCN6675.1):
GGCCAGUCAGCAUCUCGAAAAGAAAAAGAAGCAAGCAAGCAAGCAAACAAACAAACGCCAGUCAGACAAAGAUGUUACAGAGUUGACAAAACCACAAAACUGGGCCUAUCAAAAUGGCAGGCCAUAACUAAGAAUAGAAAUUCGUUUAGCCAAGUGUUUAUAGAGCUGAAAAAAUUAGCAAGUCAUAAUGAUAGCAACAGAGAGCAGAAAUGGUCUAUUCAAGUUGUGGUGUUCUGGAUAGAGAUGCGCAUUUGUCUUCCAAACAACCCUGGCUAGCUAGAUGAAGGCAUAAGAUUAUGCUGGUAUAUGCUUUCUAUUCUCAUUUGAUAACAUAUAUAUUCUUUGGAAAUCAUGGUUAUCAGUGUCUGUUCAGAAAAGGGCACACCAAUACGAGCAUUUCAGAGCAACCGAGGACUAGAGGAGGAUCUUGUAGCCCAUGAAUAUAGCAAAGUAUGUUCCUAGUCGUCAUUGCAGGUGACAUAUACGAAACGAGAGGAUAUCCCCUCAAGAUUCUGGUGUAGCAACAGCGCUGAAGAACAGCUUCCCAAUAACAGUAUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.77%
ME_num:
MEP:
58.33%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.90
Avg Expression:
10.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.2945232197229 | 0.00148160659087177 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.37957521897938 | 0.00134986629403607 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.42862266987894 | 0.000173149459161434 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.68216586295985 | 0.00197410751257275 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.48280597705238 | 0.00366174604087828 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.45644269450175 | 0.000884091157870113 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.71927108342242 | 4.22032793452429e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.9459319544199 | 0.0346931946190352 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.96396543818988 | 1.11372342420707e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.71610981230697 | 6.0569903471628e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.1227442935279 | 1.70536145170954e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.34353696966736 | 2.46600967733194e-05 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.81399772637224 | 0.0192459091243218 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.49023561902762 | 0.0474638499460165 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.57751214753261 | 1.42218731780521e-28 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.68159746015055 | 0.00755872289686966 |