Chr:
Chr7
Start:
22880853
End:
22881737
Strand:
+
Ref_name:
OSA-LNCN6670
Sequence
(OSA-LNCN6670.1):
AUCUCACUGUGAUGUUAACAUUGUUAAGAACAACUGAUCAAUAAACCAUGAUGCUGAUGCAACGUGGUAGCUCUCCUAAAGACAACUGGAUGGGUUUUCAGAGCAAUAGAGACUCAAGAUGCAAACAUUAUUACUGUGUUUCAAAGCUCUGUCUGCCACUUUUGGAUGGCUUCAUCCCCACUGAACUGUUGCUGUUGUCCUUAGGUUCUUCAUAAAUGACAAUAUGGCAUGUUGUGCUACUGCAUACAGAAGCAAUGAAGCAUUUGUCCAAGUCAUGGGUGAGGCCCCUAUAAACGUUGCAUACUUGCAUAAUGUCAGAGGUUUCAUUAAUUGAGUAGUUUCAGUACAGAGGACUGAUCCAUCUCCACCAAACACUUUAUAAAAAAUAUUUAUAUUUGUUGCUGAGAGAUCUGUCCUGCCGACCUUUUAAAGCUCUUGAUCUGAUCAUUGACAAAGUUAGUAUGAGUGAGCCUAGUAUGUUGCAUAAUGCAUUGAGGUCUCCACGAACAGUUUCAGCCGAUUGAAUGAUCCAUCUCUUCUAUUUUAAACAUAUAUUCCAUCUCCAAAUAUAUAGGUCAUUGCAGGAUAACUAUGGACAACAUCUUAAAACUUUGAUCAAUAGUAUAUGUAAAAGUAGAACACUAUACAUAUAAUUUUGACUACUUAAUCAAUCAUAAUCUCAUUAGAUUUUUUGGGUUAACGAGCUUGAGAAAACGAAGAUGCUUGCACGCACAAACUAGUCGCACAUGUAAACUGGAAAAGCAAUUUGCCAUGAGCCCAUGAGAGGAGGGACGAGGUAGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.8%
ME_num:
MEP:
73.98%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.76
Avg Expression:
4.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.38570389148409 | 0.0209263783664087 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.69637601913098 | 0.00712550817440387 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.63092462395665 | 0.00284455077960057 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.15999936005107 | 7.29402764515842e-06 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.11784156153772 | 0.0375907222741884 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.62772964677081 | 0.00481255381831073 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.69074697184282 | 2.1502137844028e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.44927285502485 | 0.0193055494522913 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.08531809180013 | 0.000860173341513496 |