Chr:
Chr7
Start:
22735189
End:
22736078
Strand:
+
Ref_name:
OSA-LNCN6667
Sequence
(OSA-LNCN6667.1):
UUUCAGAAAGGCAAGUAUAUAUAUCUGGAUUGGACCCAAAAGGGCUCGGCGACUCCAGCUCCAAUCAACCGCCGAUGAGCCUACCACAAGACUUCGCGUAAAGAGAUCCCCAAAUCCCAAACGCGAUCGACCGGAAAGAAAUUCCGCUCGCGGCGACGGCGGCGAGGCGGCGCACGGCGUAGCCGAGCCUCGUUUCGGCUCAGCUGCAGGGCCGCCCGCCUUUCGGCGUCAGAAUCGGCGCCUUUUCCGGGUCGCCGGAUCGAUCCCAUUCCCAGGGGGGUUCCCAGGGGAGGCAGCUAACGUGAGCUGUUUGUUGGUAGCCAUCGAUUUUGCGCCGUUGGAUCGAGGGAUGGACGGCUCGGAUUCCGGCCUUCAUUCCAAGGAGAAUCUAGAAAAAAAAGGCGUUUGCUUGCUGGUGCUAGGAUGAUCCACGGCAUGAUCACGUCCACAGCGGAUGGCUCCUUUGUUUAAUGCAUUGGCCCAACUGCUGCCUACCGUUUCUGGCUUGCACGCUUGGAUGAUGGGCGUGGAUGGGAUCAUUAGGGGGGCAACAAUGGAUGAUGGGGUUUGAAUGCUGGAGUGACGCGGCUGAUGGUGCUGUGCUGGCUGCCUGGCUCGCGUUUGCAACCUCAGGCAGCCCAUGCUCGCACGGCGCAGCACACGCAAGACUGACAGCAUCACUGCACCAAGCCGUUCGCUGUACCUUGCUGUAUUAUUUGGAGGAUGAUACUGUGCGAGCUCAGUUUCCCGAACUAAACCUCAAAUGUCUAUUUCGGCCGUAAAAGCCAGAUUAAAUCCUUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.05%
ME_num:
MEP:
21.14%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
2.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.24198386761499 | 0.0334193460494359 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.71728698431233 | 0.0428299275389086 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.12349738321206 | 0.00127497522454836 |
| 4 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.68363567129706 | 0.0198100925171463 |