Chr:
Chr7
Start:
22541026
End:
22541720
Strand:
-
Ref_name:
OSA-LNCN6663
Sequence
(OSA-LNCN6663.1):
CUGAAAUGCAACAACAUGAAUUUUAAGUAAAUGCUAGAACAGUAAUUAUAGUAGAUCAUUUAGUGCAGUUAUAGCCUACCACACAGCAAAGAAAAUAUAGUGGCAUUAUGCAAACAUUGACUACUUUCAUACUGGUACCACAGAUAGAAAUAUGUAGCCCCAAAGUAACAUUGGGGAUGUGUUGGUUCAAGAUGGCAUUCUCAACACAGUGGAUCAUGGCAAGUCGUUUUUGUAGUUCGGCCCAUUGCCAACUAUAUCAUGUACUAAUACUAUGAUGCUUCAUUGUGAAUCCAGCCAUCAGUAGUGAUAGAUAUCAACCAGCCUUACAUGCCUCAGGAUGUACUUUUGUAGGCUCUGGCAUGUAGCACAGUAGCACAUAGUUCUAUACAGCCAAUUGUUCGUAGUGAACCUCUCCAAUUUAUUAUCCUUUUGGAAUUCAUAUUUGGCAUGCUAUUUAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.73%
ME_num:
MEP:
67.07%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.80
Avg Expression:
9.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.34058176964612 | 5.31888587672646e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.2719241564948 | 0.000413647280216045 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.25328019632867 | 0.0114356917680077 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.0535909971293 | 0.00139447628891185 |
| 5 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.75459561869774 | 0.0441372227557106 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.22053746565645 | 3.71601410192491e-06 |