Chr:
Chr7
Start:
22329315
End:
22329820
Strand:
.
Ref_name:
OSA-LNCN6650
Sequence
(OSA-LNCN6650.1):
UGAUGAUUGAUGAUCUCUUAAAUCUCAUGCGAACAAGAAAACAAUAAGAUACAUCUGCUCUGAGCCCCUAGCAAAAACAAUCAGAGAAAAGGAGACAUGAAACACGAUUCACUAAUACGGAGAGAAGAAAGCAACAGCUAACUCCAAUCCCAUCAGCUGAGCUCAGUUUCAGUUUUACUGCUUCUGCAUAAACGCUGUGACGGCGAGAGUAGUGGCAACCUCUAAAGACAAACCGUCGCUCCAGAUCGCCGCUUCCGCCGCGGGCAUGUCAUCGCUCCAGAUCGCCAUCUCCGCUGGUGCGCCAUGGAUUGAGGUCGCCGUCUCCGCCGAUGCGUUGUCUCCGCCGGCUCUGAAUACCAGAUUGUCGCUCGAAAUCGCCGCCUCCACCAGUGCUGUGCCGGUGCGUGGGCGAGUUUCCUUUUCUUAUUUUUUGGGGCGACAUGGACGGCUCGAGGGAAGACGAGAAUUGUGGAGGGUUUUCUUAUAAAACUUAGUGGAGGAGGCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.91%
ME_num:
MEP:
16.67%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
2.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.20056625285971 | 0.00620264162873213 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.28357019450729 | 0.0192056576135555 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.15771551879136 | 0.0315359654951457 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 5.01513809342784 | 0.00134336915788041 |