Chr:
Chr7
Start:
22253562
End:
22255257
Strand:
+
Ref_name:
OSA-LNCN6647
Sequence
(OSA-LNCN6647.1):
CACCACUCGUGCGAGGUCCUCAAGCCGCAGCGGCGACGGCUGGAGCGACAACGAUGUGGCACCGGCUAUGGAGUGGUGACGAGGCGGGCUCGGCCGGCCUGUGGGGCGACGAGGUAACACCAGGCUUAGGGCAUGCUCGUCGCCCGUCCUCCUGCCGCCCCAGCGCCUUGCUUCGUGUUUUAGCUCCUCGUCGACGUUAGCGAGCUCGAGCCACAAUGGCGUCAGCGGCAGUGCGGGUUGGAGGAGGUAGCCUCAGAUACGGGAGGGAGAGGGAGGAAGGCAGCCGGCCGCGCCAGCGGGAGAGGGGGAGAGGAGGCCGGUGAGCCUGGGAGGGAGAGAGGUGUCCGACAUCCAGUAGCUCUCGGUCAGGGCUAGAGUACGAGUCCAUGCCUAGUCGGAGCGCUGCUUCUGCUUGAUUCGAUUCGAUUCGUUUCUCUUCUCUUCUCGCUCUCGGCGGCGGUGGUGAGUGCCUGCCCCGGUACCCCUUGGUGUCGAGCUCACGUCGCUUGCCACCCCUCUCCUCCCCAGCACAAAAGUAGCAGCGGCAGCCGCCGGGCGAGCGCGGCGGUAGAUGAGGUGGAGGCGGCCUCUCCCCUCUGCCAUCUCCCGCCAGCUCGAGCAACGGCGAUGGCCGGAGUAGACCGGUGUAGCUCGCCAGUCGCCGAUCUGCCCGCCGCCGAUAUGCCCCUUCUGCUCCGCCCGCCCACCGCCCGCCGCCUGUUCGAUUGAAGAAAAGAGAAGCGAAGAGCAAAAAGAAAAGAAAGGAGAAAAGAGAAGAACAAAGAACAUGGGUCCCACUUUUUUUUCUUCUCGCUCUUACAUGUGGGUUUUUUUUAUUAGGAUGCCACGUCAGCAAAACCAUGUGUCUAUACUACUAUAGGACCUAAAUUGGACGGUUUUGUAUAGUUUAGGAGUGAAGAUUUGUAGUAUUGAGGAUAAGGGAUGUCAAACAAACUUGGUGUAAAGUUGAGGGAUGGUAGGUGAACUUAUUCCUUGGCCAGUUGCUUCUAGCCUUAGUCACUUUAAACCCCUUAUAUUGAUGCUUAUUUUAAAUUGUGUCCUGUUGUAAUACCAUAUAUAAUGUAUCCCUCAAGGUACAAUAUUGAAGUACUUGAGGUCCCAAGAUAGCAUUGUGGCCGGUUUCAACUAACGUGACGAGUUGAAUAUGAUCAAUCCAGCCUCCAAGGGGGUCGGCGCAUGGCAAGCAGAGGGGAGAAAUUCGACAUAUGAGGCCUUACAGCGUUGGCAACUACUGCUGCGAUGGCGAUGGCACGAUGAUGACCGAGGCAAAGGUAUUGUUGAUAUCCCCUACGCCGCUACCAACACCACCACUCUUUGGAGGUGGUGAAGAGAGCUUGUACAUAUUCGUAGUACAAGAACCUAUCACAUCUCAUAUUAUAUUUACUUUUUUUUAUGAAGAGAGUACACUGUACGGAGUAAGUUUGUUGGGGUUUACAUUUUAAUAAAACACACCAAAAUGCUUAUAUUUUGUGGUCAAAAUAAUCAUUAGAAAACUUAUAAAAAUACUUAUAAAAAUGUUUAUAUUGCGGGCAAUCCUGGCAAAUAUUGCAAUACUAGUACUAGCAACUUAAGGCAAACAUUAGAAGCAAGAUCGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.15%
ME_num:
MEP:
64.02%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
2.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.16663773466741 | 8.61246066577604e-05 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.15743263774308 | 0.00349043722809451 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.24081534589113 | 0.023866646015361 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.98483045121211 | 8.49474608024531e-05 |