RiceNCexp:Browse

OSA-LNCN6634

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr7

Start:

21672619

End:

21673135

Strand:

Ref_name:

OSA-LNCN6634

Sequence
(OSA-LNCN6634.1):

GUCCAGCAGACAAAGCCAGCACCAACUAAGGUUUGACUGUCCAGGAGGUUUAAGCAUCAAAGCCAGACCAUGCUGUUUGUAGCAGCAGGAUUGCUUGCUCCCGUUCGCAUUAGUAGCUAUUAGAUGCUGAAAUUUUAUCUGUCUUGAGUUUUGAAUGUAACACCCAAAGUUUAUGUGCUGAACCUUCUUCGAGUCAGAUUGCGCUGUUACUCCUUUCUGGAGAUAGCUACCAGUCGUACUGUCCCUAAACACACUGAAUUUUGCUCCAUUUCUCUCUAAUUGCUGGAGUGUUUCAUAUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

261

LEP:

53.05%

ME_num:

230

MEP:

46.75%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.78

Avg Expression:

1.76

Tip: OSA-LNCN6634 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	1.94709522386782	0.00110288005807325
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	2.18967434941112	7.13886275838822e-05
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	1.48116633161773	0.0181568839846522
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	1.80860923685804	0.00209012129890478
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	1.63582043820943	0.0123678790707592
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	1.8194173731415	0.00116803655201064
7	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	3.52666681261989	0.0414985063310495
8	Nipponbare // panicle // AM--/--Nipponbare // panicle // PM	2.91690154924299	0.0104275689072732
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	1.85168347532071	0.00405618959896569
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	1.74711719426974	0.000955622794066888