Chr:
Chr7
Start:
20588712
End:
20589326
Strand:
.
Ref_name:
OSA-LNCN6619
Sequence
(OSA-LNCN6619.1):
AUGGAGAUUCCAUAUGGCAUACGAUGGAGGUAUUGUGUGUGUAUGGGAUGCGGAGUUGAAUUUGGAAGGAGUCCAAAUUUGGUACGAUUGGUUAUGUAAAGUUUCUUUCUUAUACUAGAGGGUUUCCUAAGGUGUUUAGGACUCUUAGUAUGAGUUUGGUUCGUGGCUUUAGGCUGCCUACCUCAUGUAUAAAUAGAGGGGGAGCGUGAGUCUUCCCGGUAUCGCUUUGUAUCGCUUUUGUAUAGCUUUUGAGAGCUAGUUUAGUUAGGGUUUCGAGUUUAGUCGAGAUUUUUGUAAGGAGUGUUGUUGGUGCACUUUGUAAACACAGAUAGAAGCAAUAAAGUUGUCAUGUACUUUUAGAGUUCUUCGAUUUGUGUUUCACCGGGUUUCGGCGGUCUAACCGGCAUCUCAGCGGCGGUCAGACCGGCGGCGUAAGGGCGGUCAGACUGGCGGCGGCGACAGCAAGCGGCAGCUGAUCAGGCGGUCAGACUGGAGUUCCAAUCUCGGUCAGACCGGUGGCUUUCAGACGGUCAGACCGGCACGACUACCUCGGUCAGACCGUGAUCCAUCGAUUUCGAGGGUAACUUUUAUUUCCGUUAAAAGUUUUUGGUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.21%
ME_num:
MEP:
9.96%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
2.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -3.61923612348859 | 0.0112587134582827 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.35716221505329 | 0.0112078932808868 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -5.49654479764332 | 7.16570473794329e-05 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.57674191579263 | 0.00209977930588505 |