Chr:
Chr7
Start:
19099659
End:
19103332
Strand:
-
Ref_name:
OSA-LNCN6607
Sequence
(OSA-LNCN6607.1):
UUCAUACAAAAAUUAAAUCACGAAAUCUCUCACAAAGUUCAUCACAAAUCUAAAUCCCAUAGAAAAUUCAUCACAAAUCACAAAUCAAUUCAUCGUAAGAGGCCGAGGUUGGAGAAGGGUGCCGACGGGAGGGCACGCCGCGGCGGCCGUGCGCCGUGAGGUGGAGGACCCCCUCCCCCCCAUCCCCAGCUUGCGGUGUCCAGAGUUGGAUGCCCGGAGCUCGCGGUGGUCAUGCCGAGGUUGGAGAAGAGGGUGCCCAUGAGGAGGAGGAGCACCACCAAUGGGAGGGCGUGCCACGGCCACUGUACAUUGUGAGGAGGAGGUCGCCGCUAUCGCAGUGAGGAGGUCACCGCUAUUGCCGUGAGAAGGCCGUGCUGAGCUUCCGUCGUCCAGAUCUGGAAGCUCGGAGCUCAUGGUGGCUACCCGAGGUUGGAGAAGGGGGGCGCCGUGAGGACGAAGCCACCGCCAACGGGAGGGGCGCCACCGCCGUGCCACCGUGUGUGUGUGUAAUAGAGAGAGGGGGGAUGUGGAGGAGCGGAGGAGAUGGAGGGUGGAGGGCGGCAUCUCCCCAUUGUCACUAUGUGUGAGAGAGAGGAGGCCAGAGGAUGAGAAGAUAAGAGAGGAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.71%
ME_num:
MEP:
57.52%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.97
Avg Expression:
86.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.9144312718873 | 0.00874767684452868 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.26631074810756 | 0.000960077532498296 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.69104743529737 | 2.79089056601942e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.68205754076909 | 0.0247163522477266 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.76684202466199 | 0.010557354076877 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.27474709584394 | 0.000368524889820351 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.10774598579917 | 3.29138109301482e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.87090614743538 | 0.00384856487834221 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.31995721113695 | 0.021877839281568 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.32190986967349 | 5.32272751649474e-05 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.31307987945705 | 0.00301581930814521 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.31808092687199 | 0.0355285945252895 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.54133732869685 | 0.0317208020093772 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.65297948299586 | 3.32212987178878e-05 |