Chr:
Chr7
Start:
18368840
End:
18374881
Strand:
-
Ref_name:
OSA-LNCN6600
Sequence
(OSA-LNCN6600.1):
UGGCUAACUGGCUAUCUGGUUCUGGAGGAAGUUGACAGUUUGGUGUUGGUGCUAUCUUGCAUCGCCGGCCGCCUGAUCCUGCACACCCACCGUCGACCAUUCGUCGCAGGGUUCGCAACCUCUACGAGUCUACGGCUCUACCAAUAGCUGCUCACCCUCCCAGCAGUCCAGCACCGUGUGUGCUGUCUGAAUCCCUUGCCUUACUCUCCUGACAGAAUGGGCGUUGAAGCGAACGCAUAUAGGCCGAUCGAGUUCUCGCCACGCCACCUGCAGGGAGGCCCUGAGCCGUCCGAAGAUGUUCCAUCGCCGGCCCACAUUAAUUCUACUUCCGGCCGCCGCGGCACUGCCACCGUCGACAACUCCCCCAGCUGUUCGACCUCACUGGGCCGGCAGGCUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.02%
ME_num:
MEP:
9.15%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
2.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 7.18697606200158 | 2.12066043732621e-06 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.1860245453267 | 0.0188516071285612 |
3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.6656325175515 | 0.0189742162919937 |
4 | 9L136 // leaf // control--/--9L136 // leaf // salt | -3.59277855168745 | 0.0189976571722802 |