Chr:
Chr7
Start:
18161454
End:
18162568
Strand:
-
Ref_name:
OSA-LNCN6595
Sequence
(OSA-LNCN6595.1):
UAAUUGAAUUUUUGAAUUAGCCUAUUCACCCCCCUUUAGGCCUAAUUGACACUUUCAGAAUUCAAUAUUCACCUAUAGAGAUUAUUGUAGGUAGUACAUCAGUGAUCCCUUCUAUUCCGCAUGCAAGUACCACUAGUGAAUGGCAGGGAGGGUUUGCGCGGUUCGCAGGAUCCAGCCAAAUGGUUCCCUCGAUGCGUAUAGAAGAUGGAAGCUCGUAGUUCCUUGUAGGGUACACAACGUUUUUCGGUAGUUCAAUAAACACACAUGUUAAUAUUCAUCAUUUUGUAAUUUACUGAGUCACAAACAUAUUUGCUUAUUUUUGCAGGUGUACCUUAAGUUAACAUGCCCAUGUUUCCAACGGGGGAUGUACCAAAUGUCCAUAAAUAAAAGCGCACAACCACAAGGACCAAGCUUUUUUUUGGAGAUGUUAGGCCAAGGAGAUUGUUUGUUAAGUCAACCACCUAUCAUGCAACCACAAACAACAGGAAUGUACACCGCCGAACAAAUGAUGGGAUAUGCUGGCAGCACACAGUCAUACGGAGAACCAUGUAGCUACGGUUGGGGGUCGUCAAUAGCACAGCACUAGUUAGGACCGUCGCAGCUUGAUGACCCGCUUCCAAUAACUCAGCCGACCCAAGAUUACGGGCACGUUGAUUUCAGCGGUGUUGAGGUGGCAUGUAGGUUUGUCCGUGAGCGACAUUCACCUGAAAGAUUAUCGUUGUCAGGACGCAGAUCUCUAGCUGGUGCUAGAAGAAAGGGAAAGAAAAAAGACACUACCACAUCAAGAAAUUUCGAUGAUGAGGCUAAUGAGUAGAAUGAUUUUAUAUUUUGCUUGUUCGAACUAAUCUGUAAUGUUGUGUGUUAAAACUUUUUCAUGUGUCAGCUAUGUUUCUAAAUAAAUAAAUUCGAAAUAUUUACCUGCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
3.05%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.99
Avg Expression:
5.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.50271449946598 | 2.75988761935282e-05 |