Chr:
Chr7
Start:
17690415
End:
17693289
Strand:
+
Ref_name:
OSA-LNCN6590
Sequence
(OSA-LNCN6590.1):
GAAAUUAGAACAAGAACAUGUAUUUAGAAACCUGCCAUUGCUGAAACCAGAGAGGUAGCUGGCAGCGUAACUACCACUUUGACAAAUGUUCUUGGUUGCAACAAGAGAUGAAAAAACAAAAGAAGGUUAUUGCAGAAGAAAGUUGUGCCAGCUAAAGUUGGUUGGGAAAGUUUUGUUGGGAUAUCGAAUGCCCACAAGAUUUACUUUUUCCCAAGGAAUCAUAAGAUUGGUAGUAGGAAUCAUCAGGUUGUUUGAAGCAUAUCCCGCACAGAAUGUUCAACAAGAAAAGUGUUGACAACAACAUGAAAGGAUAAAGAAGAAAAAAUGGAAGCUAUCUAUCAUGAUAGGAGUAUUCUGCCUCAAUUUCAAAUCUUUGGAGGGUUGCUACAUACGUGUACGCUUGAAAUCUCUAUUAAUUACAUCCUACAAGUAUCUUUACUACAAUAGAAGUAUCUUUAAAAAAUUCAAUUAUACCCAGAUGAUGACAUGUUGAUGCACACAUAGUCAUCAAUCAACAUUUAGACUCUAAACACAUAUUAAAUUCAAUCCACAGAUAGCUGCAUGCAUGCGUAUAAAAUGUGCUGAAAUAAUAAGUUACAAGUAAACCCUCAGCAGCAUUUGGUAGACCAGAUGUGAGGGGUAGGGAAAGUGAGAGGCCACCGGCCACCCUCUUUUCUGAUUGGGACAUCCAUUGUAACCACAUAAACAAUUGAUCAAAAAUAUUAUUAUAACAUAACAGAAACAUCAAUUUUUAUUAAAACAAGAAAAUAAGAAGCAUAAGCCGGUAUGAAUACGAUGCCUGUUUACUAUUACUACAGCCUAAUUAGCUUCCUGGAAAACGCUUUGAUUAACAGUGAUAUGUGGUCAGAUGACAUAAAUGAAGAAACAGGAUUCUCAGGUCUGAAAGGUAGCAUUUGAAUUGUUCAAUUAAAAGCACAAAUGGGCAUGAGCUCAGAAUGGAGAAAAAAAAGUAAGAGAAACUUUGAUGGAUGGACACCAUGGAGCAUGGACCAUUUCUUGCACCUUUAUUGGAAAAGGUUGGCAGGUGAUGGCUAAGAGAUGGGGGAGGGUGUCACCAUUGGAGUUAAGUGAAGUGCUCCAUGAUGUUGCAUCCAUCCAUACAUACAUCAGAUAUCAAAAUCAUGUUUAUUCAUGUGAUAGUCUCUAUUCUCUAGGAAGUUCAGGCACUUCAUUAAAUAGAUGGAGCAAGGACCAAAUGAAAUUAAAUUGGAGAUCUCAACAGAGAAAAUAGGAUCUGUUUUCACAUUUUUGUGCCUCCUUGGUUGAACUUUGGACGGUUUUAUAGGAACUGAAAUUUCAUCUCCCUUCCUCAACUCAGAGUACCAUAAACAAAUCUGCAGCCCUCAUAGUAAACAAUCUAAGAAUUCUUCCUCCCUUACCUAGUUACCUAACUAAUAACUUUCAUCCGUUCAACAAAAAUAACUAAUACAAAUUUCAAAACAAAAGAGGGGGGUGAAGAAAAAGCCAAGACAAACAUACCAAAACUUCUCUCGGGUACAAAAACAGAAUAUGAUUAAAUUCACCCAAAAACAGACUAAAUCAGCCACGCAGAAGCACAAGACGGACUCUAGAAAAGAACUAAAGCAAAUCCGGAAUAUUCAGAGCAAAGCAAAACAUGCAGAGGUGUCAGCAGGGAGGGUGGUAACCUU
Sequence
(OSA-LNCN6590.2):
CGUAACUACCACUUUGACAAAUGUUCUUGGUUGCAACAAGAGAUGAAAAAACAAAAGAAGGUUAUUGCAGAAGAAAGUUGUGCCAGCUAAAGUUGGUUGGGAAAGUUUUGUUGGGAUAUCGAAUGCCCACAAGAUUUACUUUUUCCCAAGGAAUCAUAAGAUUGGUAGUAGGAAUCAUCAGGUUGUUUGAAGCAUAUCCCGCACAGAAUGUUCAACAAGAAAAGUGUUGACAACAACAUGAAAGGAUAAAGAAGAAAAAGUAUGUCUCCUUUCUGCAGAUCUUUGUAUUCACAUCAGCUGGAUAUCAGUUUUUAACUCCCUGUCUGGAAUUUACAUCUUUACAGAUGGAAGCUAUCUAUCAUGAUAGGAGUAUUCUGCCUCAAUUUCAAAUCUUUGGAGGGUUGCUACAUACGUAUGGAGUAUAUUGGUUGAAAAUGGUACCACUUUUACGAAAAUGAUAUUUCGAACGCUCAGGAAUUUCAGCCACCGUUUUUGUUAUAAAUGAACAAUGAAAGAGAUUUCGUUUUAGGUAAAAUUAAUCAAGGAUUGUUCUGUUCAAAACUUACUGUUUUUUAAUAUGAUUAUUAGAUGUGAUUAACCAAGAUUUUUUUAUGUAAAUAAUCAAAAGGAUUGGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.28%
ME_num:
MEP:
77.44%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.78
Avg Expression:
4.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.04368813477708 | 1.13628301248491e-31 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.86617091522182 | 5.58383393715468e-34 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.26726002801075 | 0.00291892973636108 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.67899628616578 | 8.34441278111314e-06 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.87987033183147 | 8.04408165297345e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.22862539660311 | 1.31617494068572e-52 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.58517175954704 | 0.00692422693113621 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.30406533877598 | 3.7935952564271e-17 |
| 9 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.0431919443968 | 0.038129984041251 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.64138680554607 | 1.74959074311716e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.35335542902705 | 2.9607667949056e-08 |