Chr:
Chr7
Start:
15728362
End:
15746559
Strand:
-
Ref_name:
OSA-LNCN6546
Sequence
(OSA-LNCN6546.1):
GGAAUGCCCAGUUUCUUCAGAAUUCAGAUAACUAAUUACUUCUUUAGUGCCAACUUUCUUACCCUCAAAUUGAAUUGAUUUUUUAUGUUUGGUUAAUUGUAGAUAGUGCUUCAGUUUGGAAAAGGUGAGGAGAUUAAAAUUUGUGGAGGUCACUUGGCACAAGUGCUGCUUUUCACUCUUCAGUCACUGAAGACUGAAGAAUGAAGUACCCCUGUACAAUGUAAAGGUAUUGCUGGUAUUAGAACAUGGGAUGAUAGUCAUCUUUUUUUUUUCAGGAAUAAGCAACAGAUUUGGGCAUCAUUGCAUUGAGACGGACAAACGGUUUAUGAAACAUCAGGCACACCAUAUGUGCUGAGCACAGAGCUAACUGCAGCCUUGGAAGCAUAGCCUAAUGGGCUUCAUUGAGGGUGUGGUGUACUGGUGUUAUUCCGUUACUGAUUCUGACCCAGUAAUCCUACCAAAUUGGGGAUGGCAUGUUCUGUGGCUACAGAGGUAGUACUUCAGUUUGCAAGAGAUGAUGAUACUAAAUUUGGUGGAAGUCACUUGGCAGUUGGCACAAGUGCUGCUGGCAAGAGACAGGAGGCUGACUGGAGAUUGGCAGGUACCCUUGUACAAUGUAAAGUCACCCAUCCACAGGAACCCUGUGCAUCUAUGAUCCAAGAUCCAACACUUCCGCAGAAGUGGAGAUUGGGAUUCAGGAGAUGAGACCUGGAGGCCUACUGAGUUCACAAAAUGAUGGCACAGUGAAUGGUCCGGCAUUGUCAUAUCUUCAGCUUGACAUUAACAAGUUUUGCAGAGAUAGCUGUCUCUUGUUGCAUUGGAACCUGCGAAAUUGUUGUAAAUUGUUGAGGAUGAUAGAUGUCUUCGUUUCAGUAUUUCAGUAGAUGCAAAUAUAAUGUAAGAUGUAAUUGUAAGUGUUGAUCCUGGUACCUGACAUAAGUUAGGGGAACUACAGCUCUGUUUUGCAGCUGCUAGUGUGGUCGUUGUGUUAUAAGUGACAUUUGCAGUGCAAAUAAAAGGAUGUGAUUCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
18.09%
HE_num:
HEP:
80.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.55
Avg Expression:
24.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.36093123548899 | 6.67144698836579e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.23040072414981 | 1.11655112976271e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.83012809986081 | 5.49553742505098e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.95466406225198 | 5.0892382013789e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.84628946560326 | 3.9352815477677e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.43119651550248 | 1.12416051452748e-13 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.16938165808269 | 6.39002468137312e-06 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.05393578362011 | 0.0252516851983769 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.06063753802509 | 0.000112843746458834 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.97501630956452 | 7.62066106059648e-12 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.37302489414361 | 4.2695176298735e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.15664023164956 | 3.06604047085784e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.54988524883141 | 8.86017318687408e-11 |