Chr:
Chr7
Start:
15751266
End:
15751804
Strand:
-
Ref_name:
OSA-LNCN6544
Sequence
(OSA-LNCN6544.1):
GCUCAAUGGUCUUUUAGAUUGAUAUCAUAAGCUCCAAGGUUUCCACUAAAGCUUACUUCCCUGAAGUGAAUAGCAAACUCAUCGUUCACAGGUUCAAACUAAUGAUGACACAUGUGUUGAGGUGUUCCAGUCAAAGUGGAGGAGUAACUGAUGUUAGCAUGGGCCAAGCGGAUUUAGUGGUCGUCCUAAUUGCUCCUUUAUUUCACCAACUUGAUGGGGGUAAUCUGUUCCAAUCCUCUCCAGUAUUUGAUUCCGUUAUGUUGAUGGAUUCAAUAUUGCACUUGAGUGUCCAGUGAAUCAAAGGGAUUUGUCUCUAGAACUUGCAAGAAUCAAACUGGAAAAGGAAAAGACCAGUAGGGGAGGAGGGUUUC
Sequence
(OSA-LNCN6544.2):
GCUCAAUGGUCUUUUAGAUUGAUAUCAUAAGCUCCAAGGUUUCCACUAAAGCUUACUUCCCUGAAGUGAAUAGCAAACUCAUCGUUCACAGGUUCAAACUAAUGAUGACACAUGUGUUGAGGUGUUCCAGUCAAAGUGGAGGAGUAACUGAUGUUAGCAUGGGCCAAGUAUUUGAUUCCGUUAUGUUGAUGGAUUCAAUAUUGCACUUGAGUGUCCAGUGAAUCAAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.01%
ME_num:
MEP:
53.05%
HE_num:
HEP:
33.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.40
Avg Expression:
5.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.04686862089724 | 0.0303186705013355 |
2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.0469701024016 | 0.0308046245723098 |
3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.04702426440607 | 0.0303761090470226 |