Chr:
Chr7
Start:
14374894
End:
14375556
Strand:
-
Ref_name:
OSA-LNCN6516
Sequence
(OSA-LNCN6516.1):
CCCAAGUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACGCCCUAGUCCUUCUCUUUCGUUUGCCCCAACUCCCGUCCUCUCCCGUGCCUCCUAGCCGCCGCGCCGCCGCCGCUAAGCUUGCCGCCGCCGCCGGCCAUCUCCGGCGCCGCCGCCCAGCCGUUGCCGCCGUCGCCGCCGCUUGCCGCCACCGCCUUUAGGUGCGUGGGAGCGAGGAGAAGCUCGGCCGCCUCUUCCCCGCAGCCGCCGGCCGCCGUAGCCCGCCGCCCCCGUGCAAGCCGAGCCGCCGCCGCCGCCCCUUCGUCGCCGGCCGCCGUCGUGCGUCGUUCGGCGUGUAGUUUCCGACGUUUCGGAGGAGAGCGUUUCCGUUGAGGAUGGUUCCGAAGCGUUUGCGGAAGCCCAAGAAGAGGAGUGCUUCAGUGAAGGUGAUGAUCUGGAGGAUUGAGCUUCUUCCUGGUUAUGAUGCCUGUGGAGUGGAGUCGCCAUAGCUGUUCCGUAGUUUGCUUUAGUUUUUUUUCUGCUGCGUAGAAUGUUAUUCUUUGAGAGGAACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
5.69%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
2.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -4.92507156764334 | 0.0378847432214362 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -4.42412837830549 | 0.0399408173210323 |