Chr:
Chr7
Start:
14229924
End:
14237134
Strand:
-
Ref_name:
OSA-LNCN6512
Sequence
(OSA-LNCN6512.1):
ACAGAAUCGACAGAUCGAUCCGCAGGUUAUCGCGAUCGGCGAUUCGAAGGUGACGACGGCGCGACCCAUCGGCUAUUCGAAGGUCACGGCGUCUGCUGAUGUCUACGCCGGCGUCUUCCAUUACCAAUGCCUUCGGUAUGACUAUCCGCAGGCGACUGGCUGGCCGAAGAGCUGUGACCAGACAACGACGCCGUUGAUCUUCGGGCAAGUCAGUGUGGCCGUGCGGCGACGGCAUCGAUGCAGGCCCAUGCUACGAUCAAGAUGACGUUGAGCGUCGUCCGGAACUGGAACAUCGACUAUGCUGCAGAUCGAAUUUGUUUGGUGCAUGCAAAUGCGAGAUGCAUGUAUCGUGGACGUAGAUGGUGCUGACGACAGAACAGUCCAGCAUGUGUGGCCGUGCGGCGACAGCAUCGUCGUCGGCAUCGAACCCGUGAUUCCUAGCUAACGGUGUUAAUCCAGGAAGACACAUUCUUGUCCACCUCUCUCUGGCGUGCGGUCGGCGUGAUCCCAUCGAUGUUAACCGAGAUCUGUCUGUGGGGAUGCAGAGAUUCUUCGAUGAGCCACAUCGAGGGGUGAUCCCGUUAUGUUUUGUUCUUAGUUUCCGAAAGUCUGCGUUGAUCUUUUUCUUUGGUCUGGUAAUGUCCAUUCAGAAUUCAGUGCCCUUCUAGGGUAUUUCAUUAAUUUAGGUUUAUUCAUAAUGCAACAGCCGAUACUUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.47%
ME_num:
MEP:
24.59%
HE_num:
HEP:
70.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.84
Avg Expression:
400.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.49860642928763 | 0.0469997082897439 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.22388204690472 | 0.00469337617678439 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.43986517372593 | 0.000426486367161665 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.36394216488404 | 0.000216572338792649 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.61955502247017 | 0.0170411926077591 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.8883971340856 | 0.0317466200325599 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.92857070705105 | 0.0423515622219942 |