RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6509

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

14133604

End:

14138014

Strand:

+

Ref_name:

OSA-LNCN6509

Sequence
(OSA-LNCN6509.1):

CCACCGUCCAUCAGCGAACACCACCGACCAAGUCAGCAAGCGGAUCCAGAUACCGAGCCCGUUUUGAUUUUUAAAUCGAUAGAUCGAUCCGCAGGUUAUCUCGAUCAGCGAUUCGAAGGCGACGGCGGCGCGACCCAUCGGCUAUUCGAAGGUCGUGGCAUCUGCUGAUGUCUACGCCGGCGUCUUCCAUUACCAAUGCCUUCGGUAUGACUAUCCGCAGGCGACUGGCUGGCCGAAGAGCUAUGACCAGACAACGACGCCGUUGAUCUUCGGGCAAGUCAGUGUGGCCGUGCGGCGACGGCAUCGAUGCAGGCCCAUGCUACGAUCAAGACGACGUUGAGCGUCGUCCGGAACUGGAACAUCGACUAUACUGCAGGCAAGUCCUUCCUUCUUCCGAUUUUCUUGAUUUGCUUUUUCUACGUUGCAAAUCGAUAAUGCAUGCAUGCAGAUCGAAUUUGUUUGGUGCAUGCAAAUGCGAGAUGCAUGUAUCGUGGACGUAGAUGGUGCUGAUGACAGAACAGCCCAGCAUGUGUGGCCGUGCGGCGACAGCAUUGUCGUCGGCAUUGAACCGUGAUUCCUAGCUAAUGGUGUUAAUCCAGGAAGACACAUUCUUGUCCACCUCUCUCCGGCGUGCGGUCAGCGUGAUCCCAUCGAUGUUAACCGAGAUCUGUCUGUGGGGAUGCAGAGAUUCUUCGAUGAGCCACAUCGAGGGGUGAUCCCGUUAUGUUUUGUUCUUAGUUUCCGAAAGUCUGCGUUGAUCUUUUUCUUUGGUCUGGUAAUGUCCAUUCAGAAUUCAGUGCCCUUCUAGGGUAUUUCAUUAAUUUAGGUUUAUUCAUAAUGCAACAGCCGAUACUUUGCCAGUGAUUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

270

LEP:

54.88%

ME_num:

209

MEP:

42.48%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.80

Avg Expression:

2.30

Tip: OSA-LNCN6509 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.232286511115970.00108642580788061
2Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"-2.462254762242140.00774112731022945
3Baldo // root // control--/--Baldo // root // 100 mM NaCl-3.046205354607146.76424576996498e-13
4Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl-4.077922601449451.37487365847028e-42