OSA-LNCN6502


Function Link


Basic Info

Chr:

Chr7

Start:

14464177

End:

14466577

Strand:

-

Ref_name:

OSA-LNCN6502

Sequence
(OSA-LNCN6502.1):

CCCACAUGUCGGACCCUUCCCUAACGUCAGGCCGGCUGCAAGCCGAGCCCAAGCCGGCCGCGCCACGCCGCCUCCUGCUCCAAAUCCGCACCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGGGUUUUUAUCCUCUCAUCCUCCUCUAUCGUUACCAACAAAAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCGAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGUUUUCUCGGGCCAAUUUCUUGCGGGAGGAGUUCGAUCUCUUCAAUCGAAGGCUAUAUAUAGGACCCCCUAGUCCCCCUCUUUCAUUUGCCCCAUCUCCCGAGCUUUCCCGUGCCUCGUAGCCGCCGCGCCGCCGCCGUUUAGCUCGCCGUCGCCGCCGGCCGACUCCAUCCGCGCCGCGCCCCCGCCUCCGUCGUCGCCGCCGGUCGCCGCCACCACUGUUUGGUGCGACCAUCCCUUGAAGCCGUCGACCGCCGGAGCUCCGCCGCCACCGCCGACCGAGCCGCCGCUGCCAUCCACCUCGUCGCCAGCCGUCGUCGGUUGUCGUUAGACGUGUUGUUUCCGACGUUCCGGAGGAGAGCGUUUCUGUUGAGGAAGGUUCCGAAGCGUUUGUGGAAGCCCAAGAGGAGGAGUAUCUCAGCGAAGGUGAUGUCUUGGAGGAUUAAGCUUGUUCUUGGUUAAGAUGCCUGUAGAGUGGAGUCGCCAUAGCUGUUCCGUAGUUUGCUUUAGUUUUAUUUUCCGCUGCGUAGUAUGUUAUUCUUUGAGAGGAACUAUCUACCUCUGUAAUAAUUUAUUAUUUGCGAAUAUUAAAUAGUUAUUUAUUUGUACUCUAUUAUCAAUUUGUUAUUGUAUGCCUCGGCUGAUUCCUGGACGAGGGUUUAACACACAUGUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGACAGUAUCGG

Sequence
(OSA-LNCN6502.2):

CCCACAUGUCGGACCCUUCCCUAACGUCAGGCCGGCUGCAAGCCGAGCCCAAGCCGGCCGCGCCACGCCGCCUCCUGCUCCAAAUCCGCACCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGGGUUUUUAUCCUCUCAUCCUCCUCUAUCGUUACCAACAAAAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCGAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGUUUUCUCGGGCCAAUUUCUUGCGGGAGGAGUUCGAUCUCUUCAAUCGAAGGCUAUAUAUAGGACCCCCUAGUCCCCCUCUUUCAUUUGCCCCAUCUCCCGAGCUUUCCCGUGCCUCGUAGCCGCCGCGCCGCCGCCGUUUAGCUCGCCGUCGCCGCCGGCCGACUCCAUCCGCGCCGCGCCCCCGCCUCCGUCGUCGCCGCCGGUCGCCGCCACCACUGUUUGGUGCGACCAUCCCUUGAAGCCGUCGACCGCCGGAGCUCCGCCGCCACCGCCGACCGAGCCGCCGCUGCCAUCCACCUCGUCGCCAGCCGUCGUCGGUUGUCGUUAGACGUGUUGGUGAGCACCGUUGCGUUCGUCUCGUCGUCCUCUACGUGUACAUGUCCUCCAAUUUCGCAGCCGACCAUCCAAUCUCCGGCGAGGUCGCCAUCUUGUUUCCGACGUUCCGGAGGAGAGCGUUUCUGUUGAGGAAGGUUCCGAAGCGUUUGUGGAAGCCCAAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

273

LEP:

55.49%

ME_num:

216

MEP:

43.9%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.86

Avg Expression:

2.01

Tip: OSA-LNCN6502 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.263896523919170.0339077501257648
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.748075779951070.00425889066767714