Chr:
Chr7
Start:
13608883
End:
13609744
Strand:
-
Ref_name:
OSA-LNCN6492
Sequence
(OSA-LNCN6492.1):
GUGAAAUAUAAUAUGGCUGUGAAUGUAUAGUUGUUCUGUGAAUGUGUGGUUGUGUGAAAUAUAUUAAUGGCUGUGUAUGUGAAUGCAUAUAUAUGUAUGGGUGAUGCUGGGAGCUGGGAAUAUUGAAUAUCUGUGUUUGUUUCUGUCAUUUUUGCAGCGGACAUAGCUAGCAAAGGCCCGAGGCUAGAAAAAAAAACAAAAUUUAUUUUUUUAUUAUACUCAUCUGUGACGGGCCAUAACUAAAUGCCCGAUUGAGAUAAUGGUCAUGGGCUCUAGUUAAUACCCGAUUGAGAUGAAUCAUCUGUGACGUGCUCUAGUUUAGACCCGAUUGAGGUCAGUAGUCAUCUGUGACAGGCUAUAGUUUAGACCCGAUUAAGAUGAGUAUCAUCUGUAACGUGCUCUAAUUGAGACCCGACUGAGGUUAGUAGUUAUUUGUAACGGGCUAUUUGUGGCCCGAUUGAGAUAGGUCAUAUGUGACAGGCUAUAGUUUGACUGGUAGACUGUAUCAAAACUAUCGAUGACGGGUUUCAAUUAGAGCCCGAGCCCGAUUGAGAUAGGUUCACGAUUUUGACCGAUUAGAUUAGAUUGAGAUUAAACGCUAGAUUGAGAUUAAACACCGUAUCCGAUUGAGAUGGAAUUUACCGCCCGUGAGAUAAGAUAAGGGUAUCCGUUCUAGUGGCAUUUGCUACUCCGAUUACAAUACAUAUAGAUGCUAUAUAAUAUAGAUGCCGUGAUAAUAGCAAACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.51%
ME_num:
MEP:
3.25%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
1.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.62911503431087 | 2.64802662298609e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.86974406096002 | 9.02579653734342e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.69025879429649 | 3.58417836480123e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.88546131078798 | 8.14306292322427e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.80515565668299 | 0.0296489283454718 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.29644994868224 | 1.07025791494036e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.14349029675545 | 3.19428880513433e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.68894860312794 | 9.6389661094457e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.72796785831899 | 6.12812656913468e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.62243670685185 | 6.70434805733894e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.29896714867458 | 4.93143445651467e-08 |