Chr:
Chr7
Start:
13572477
End:
13577502
Strand:
-
Ref_name:
OSA-LNCN6491
Sequence
(OSA-LNCN6491.1):
AUCUGCACCGGCAAGAUCAACAACCCACGGAGAGGUGUAUCGAUCGCUAAGGCGCAACGCAACGUCUCGUACGGUUGUAGUCGGAUCGUCAACGUUUCUCCCAAAUCGUAGUUAUCACAACUCACCGAAAGAUCGGGCCAACAACAGUCUUGAGUGUCGAGAGGAACUCAGGGUUCAUCAGGUGGUAUCAGAGCUUUCGUUGCUCGGUGAGUUUUCAUUUACCUAUAACCAGAAAAUAGCCCGAAAAAAAAAUUCAUACAUUGCCUAGCCACAUUUGUGCCAUUGCAUUGUUCUUUUCAGUUUUUGCUUUGUUGAAUUUUGUGUUGCAUCGUCACGUCGUGUUGCUGGUCAUAGCGUUUAGUUCGUUUAGAGUUUCGAGUUCUGGUCACGUUUUGUACCACUGUCAUCGUCGUCGUCGUGUGCUUUGUUGUCGUCGGGACCUACGAAAACGGAAUCGUCUUUCCGCCAGUGUUCCAUUUUUCUAGUUUUCAGAACUUUCUGUCGGUCAGUUUUGGUGUUGUGGAGUUGCAUCUAGUGUUUUGGUCUGUGGUUGCGCACUGUCCCGUGCUCCUGUUGUUCUGCUGAUGCGCGUGAGGAAGAAGGAAGGCGUGAGGAAGAUGGAAGGUAGAGAUUAGAUUGGUUUGGUUUCUAUUUCGGGGCCACGUAGAAAAGGUAAUAAGGAAUCAGUUUCCUUCUUUCAGACUUUUUCACGAGUCCCACCACCUGUGCAUGCGGCAUUCCUUCCUUGAGUUCGACUCCCUCCUCCAAAUCACGUACAUCACAAGGUUCCGAGUUGUAUCAAACACCUUGGUGAAUUUUUAUUUGGUGUCGGUUUCGAGAUCUGUUUGGAAAAACGGAACCGGCAUAAAUUCAACAUUCCAUUUUUGUAUAGUUCUAAUUUUGGGUUUGAACUUUUACAUUUGAGUCCCUAUAAAUUUUGUAUUUACGUUUGAGUCCCUGUAAUCUUACAUUGAGGUCCUUGAAUCUGUUUUUGUAAAAUAAAAUCAAAAGAAAGAAAGAAAAAAAAAGGCAGAAAGGUGCAUAAAAAAAGAAAAGAAAAGCCGCACCAAAAAAAAAGAAAAGAAAAGGAAAGGAAAGAAAAAAAAAGAAAGAAGAAAGAAAGAAAAGAGAAAAUAUUGUUAUGUUUGAGCUGAACUUCAUAUAUCAGAGUUGUGCAUGAGUUGUUCCUAGUGCUAUCUUGUGGUAUCGUUUGUGUCUAGGCUCGCGUCUCUAGUACGUUCUAGCCUAGGACCAGCACGGUGCUUGACUUUGAACAAUUAUUCAACUUUGCAUUCUCUGAUUUGAGCAUUUGCUAUUCCUUUGCUACAUAUUUAAGCCUACCCAGAGCUCCACAGAUUUGAUUGCACCCGUACAACAGGUGUUUGCCAAGGCAUCGAUACAUCCAACCUCCAUUGGGAUACUUGAUUGAGUCGGUGUAUGUCACCAUUCCGCUUGCUUUGGUAAGAACUUGUAAGAGCUUGGUUAAAAGCUUGAGUGUGUGUGAUAUUCGAGCUACCACUACCAAGUAGUUGAUAGGAGCGUACAUAUUUUUGUGCAUGUUUCUUGUUUUCUACUAACAAUGGCAGGGAUACGCAAGACAAUUGGGGAUGAUUGUGCUCCAUAUCGACAUCUUCGUCGCGACAUGAGGAGUGAUCAGCAUGAUGCUGAUGAGGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.9%
ME_num:
MEP:
2.64%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
2.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.04279644213533 | 0.0155943294222283 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 11.1027969019806 | 4.2715945659417e-20 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.77735761503113 | 0.0330379461615304 |