Chr:
Chr7
Start:
13402595
End:
13403475
Strand:
-
Ref_name:
OSA-LNCN6487
Sequence
(OSA-LNCN6487.1):
ACUUUUCUUGACUAACAUGACUCAGAAAUUUGAGGAUGGGGAACAAAGAACGAGCUCGCUUGAUAGCACAUAGAGUCAAGAUAGCUGAAGCUCAUACGAAACAAGUUGUGAGAGGAGACUGCAUUUGAUAAAUUAAUGUCGAGGUUGCUAAACUGGAAAAGGAAAGAAUGUUUUUGUUAGCUUUGGUUGAAUGAAUCAAGAAUUCUGGAUUUCUUGAAAAAAGAAACCAGUUUCAAAUAACAUUGAUAGAAACAAAACAAUAUAACUUCUACAGAUGAACUGAGAAAAUGACCCACUUCUUACACCUGCACAUAUAGCAUUGCUGAGAAGAUGGCCAUGUUGGAAGAAAAUUAGAUGGUUUCAGCAGGAGUUAGGAGUCUGGCAUGAGAAAGUUCAGGGGUGCAAUUGAUGUUUGAGGGUUAAUGAUGUCUUUGGAACUCGAGUCAAGUUCAGACUUAUUCCUAAGAAUUAUGGCAGCUCAAUAAGAAUAUUCUACAAGAUUCUUAAGAGGACCUAGCCACAGGAGUAAAAUCUUAACUCCGAUAAACAAUUAAUAAAAUGCAUUAUGAAAAUCAUAAACCAUGACAACAUGUUUGUGCUAAUAUAGAGGAAAAUGCACCAAAUAGAGCUUUUAAAAUAGAAUUUAUUAAUUAUACUUCACAUGAAGCAGAAAUUGUUAGUAAAAAUAAACAAUACAAGAACUUAAUAACUACCUUGCAUGUUUGCAUAACUUAGCCACACAGUUUCAUGCACCAAGCAGGUCAACGAAAAUUUUAAACUCUGAGCUGACAUGGUAUCUACUUCCAUGUAUCAAACAUUUCAUCUAAUCUGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.1%
ME_num:
MEP:
18.5%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.91
Avg Expression:
2.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.46234051190048 | 0.00931044840763164 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.71412019098093 | 0.0443795531850453 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.38512247460821 | 0.0149457419904929 |