RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6477

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

13026663

End:

13027965

Strand:

-

Ref_name:

OSA-LNCN6477

Sequence
(OSA-LNCN6477.1):

CAAAAAAAAGUUCCAAACAGUUAUAGUUCUUGAAUAAAACAAUUACUAUAAACAUAGAAAAGGUACAACGUUAUAAACACUCCAUAUUAAAGAACAUGGUCAGGUAAAAAAUAAGGGCCAUCACAGAAAAUAAAAAGAUAUGGUCAGGUGAAAAAUGGCAUGCAGAUCCAAAAGUACCCCCUAAGUUGCCCUAAACGAUCCUACAUUUCCCAGUGAAAUAAUUUGAGUGUCUAGUCCACAUAACCACAUGAGUACUGAGUUGAUCCGACCAAAAGAAAUAAAGAUUCAUUAUCCAAAUGUGCAAUAUAAAAAAUGAAAAAUAGAAUAAGGACUCCCCUCCAAGUUUUAUCUUGCCUAAUACAGGUAAGCACUUAUAAUACACAUGCACCCACAAAACAAUUACAAGAGGCAAACUAGAAAAUAAAGCGGGCAAACGAAUACCUAGAUUAUAAUUUGCAAACUACACAUCAGAUAAGAACAAAAACAGAUUAGCGAACACACUAGAUUACUAACAUUGUCAUUGGUAUGCCCCAUUGCCAUGCUAAAAGCCUAAAACAGCACAACCAACUGGCAGGUCCGCAUAAUAACUAAUAUAUCAAACAACUUAGGAGAAAUACCAGUUAAAUUGCAUAUGUCAAAGUUGGUGCCCACAAAAGCACCUCUAUCUAUUCUUGCGUUACACAUAUAGAUUGCAUAAUGGAUUAGAAACAGCAAUAAACCCAAUGCUGGAAUUGACGGAUCAUCGACAAAUCGACAGAGCACCAAACCAAAUGCAUCAAGAACUCCGCAUUCGAAGAAGAUUGGUUCGAUCAUACCCCACAAAAUCAUGCGAAAUUACCCUCAGAAACAUAUUUUUUUCGGGCAUCAAGAUUUAAAACCAACCACCCACCAAAGCAGAAGAUUCUUAUGGCAAAUGCCCGCAAAACCCACAUUAGCAAUGCACAUCAAGAUGAAAACCAACCACCCAUGAAAGCAGAAGAUUCUUGUGGCAGAUGACCACAAAACCCACACCCGCAAUGCAAAUCAGGAUGAAAACCGAUCACCCAUCAAUCCAGAAAAUUCUCAGAAUCCAAACCAACCUACAAAAAACCCUCAAGAACACGAUGCCUGCCACACCAAAACCCUACCCUCCCAGACCCUAAAGAUCAAAGCAAGAUUCAUCAACUGAACGGAGAAAGAUCGUCGGCGAGGAGAGCGGGUGGAGGGAGAGGAUACGGACGGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

158

LEP:

32.11%

ME_num:

325

MEP:

66.06%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.85

Avg Expression:

8.38

Tip: OSA-LNCN6477 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.209820299963140.0202887453646843
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.011345520757970.023483770047899
3Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"1.380291744266470.0025935190059394