Chr:
Chr7
Start:
12677581
End:
12678727
Strand:
+
Ref_name:
OSA-LNCN6471
Sequence
(OSA-LNCN6471.1):
GGUGGUAUUAUGCUUUGCUGCUCCAGACAGGUUUCAGACUAUGCAUGGAAUAAACCCACUGUAUCCCUGCUCUCUCAUUACUUACUAUUGUUUUUCUUUUGGAGAUGGGAGGUGGGUGGGUGUGGGGUAGCGAGAUUGACAACAUCCACUAUUGGUUACGGUAGCCAGCUGCUGCACCAUACUCACAAGGGCAGACAUGUCAUAAUGACAAAGAGAAGACUCGUACCCAUCAUGCCACUGUAUGUAUUCCAUGGUCCAUGGGUUUCUAUACUUUCACUCAUGAGCCUUUGUGUGUAGGAAGGGCAUAUAUCAACAGGUUUGUCAACAUGAACUUAACAAAUCAUGAAUAGCAUCUGAAUAAAAACUAACAUUUUGAUUUGGUCAUCCAUUUGGUCUUGUAUUAAACUGUGGGCUUGAGAUUUUGGUUUGUCACUACUCACUCGGACCUUGAGCCAAAUUAAUUUCAUAAUACAGAGUACAUAUUUCCCGUUAUUUAUUGAUAAGCACUGUUUUAAGAUUCACUCAGGUUCUCCUUCAGAAAGAGGAAGGGGGACUCUGAAGUGAGUUAGAAUAUCAGGAAGCAAACUACAACUGAAUUAUAAACAAGGUUUCCUAAAGAGUUCUAUUUAUCCUCCAUUAUGUGCAAGAGUUCCUAAAGAAACAAUUGUUUAACCUUAUAAGUAUGACAUUGAAUAUCGUACUUAACAUUGGAUGCACUUCCUCCGUCCCAAUACAAGUGCAUCCUAGUACAAACGUGACAUAUCCUAAGACUACGAAUCUGUACUAGGUUGCGCAUAAAUUGGGACAAAGGGAGUACUGAAUAUGUUUCAGUCUAGCUAAAAUAUUCAAGAAAAGCUUAAAUUGGGACGAAGGGAGUACUGAAUAUGUUUCAGUCUAGCUAAAAUAUUCAAGAAAACCAGUAUGUGCAGGAACAACAUGCGCAUACAUAUGCAUUAAUAACUUUCUUCCCAUGGUAUGAGCAAUGAAUAGAAUUAAAUCUACAGCGAGUGCUUGAAAACCAGCCAAUGAGAUUCCUAUCAAUCUAUUGGAGGUGACAGCAUUCAAUAUAAGCUUCUUCUGUUUCUCCUAGAUAAAUGUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.28%
ME_num:
MEP:
69.11%
HE_num:
HEP:
25.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.57
Avg Expression:
8.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.40956388171562 | 4.0148025261486e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.34967996011684 | 2.9883831269407e-07 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.66289964182384 | 0.00978070204039284 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.20319051842988 | 6.10813687554012e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.0303987300569 | 0.000421999401159177 |