RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6465

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

12420114

End:

12421380

Strand:

+

Ref_name:

OSA-LNCN6465

Sequence
(OSA-LNCN6465.1):

CCCCAAGCCCCCCUAGCGUUGGGGUUUGCAAUAUGUUGAAAAUCUUGGCGAACAAAUCGAGUUAGAAAUAAAUCACACAUAGUACUACUGCCAUAUCCAACCUACCUCUCUUUGGGCUCUUGGCCCAUAUCGUUUUGCCCAUGCUGAUAAAGCUCAUAGAGAAAUCACCGAGAUGAAAGUCGAAAAAAAGGAGAAAAGAAUAAAACUAGUCUUAUUCUCGCUCAUUCCCCGUCGUUGGCGCACUGCGGAUUCCGUCGCCACCAAUCCUCCAUGAUCCCCUAUUCCUGUUGCUCACAUGGGCCACGACAUGUUCGUCCGCUAGAUUCGGUGCUGUGCAACCGCUAGCCAUAGCGGGCCUAAUCCGGCGUGGAUAGGGAUUAGGGAGGUGACGGCCGACGGUAGGUGGCUGGCCGCAUCUGAGAGGAAACAGAGAAAGUGAGCUGAGCUAUAGCUCGUUGUUGGCAGCCGGUCAAGCUCUAGUUCAUCCGUCUAGCUAACCACCGGAGGGGGAACGAAUCAUGUGGAAGAUAGGGAUCGUACCUUUUGCAUUCAACUCCCUUUGAAUAGCAAAAUUUACAGUUAGGUCCUUUGCACCAUCUCUACCUUUGAAGGCUUUGAUGCGUCGGAGCAAAUCCUAGAAUCAGAGAAGGGGACACGUGGCAGAUUUUCAGAUGGGCCCUAACGAAAUUUAUAAGUUGGCAUGUGGCCCAAUGAAAAACUUGAUCCUGAACCCUGCAAUUGGUAGUAUUAGAGAUGUCGAUGUCCAAAGAAUAGGGACCUUAAAUAGACUUAUUUAGCUAUUUAUAUAUCACAGCCCAAAGAAGAGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

354

LEP:

71.95%

ME_num:

132

MEP:

26.83%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.93

Avg Expression:

2.22

Tip: OSA-LNCN6465 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.035068419217330.000590457678114639
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.144210604507440.00884271215325566
3Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated-1.20689597062270.0286890015958173